RNA id: AMCG00021087


Basic Information

Item Value
RNA id AMCG00021087
length 3786
RNA type mRNA
GC content 0.46
exon number 7
gene id AMCG00021087
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 2588168 ~ 2597708 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGGAAGTGGACGAGTCTAACAAGCCGCTGTTCGCAGGGCTCTCAGATGTGTCGATCTCAGAAGACATCCCGGTGGAGGGCGAGATCACTGTGCCCGTGGGCTCCCAGACACAGGAGGACGAGTATTCGACTCTAGACGAGCCAGTTAAAGACACCATTcTCAGAGACTTAAAGGCAGTCGGGAAGAAATTTGTTCATGTGATGTATCCCAAAAAAAGCTCTGCGTTACTCAGAGACTGGGATCTGTGGGGTCCGCTGCTGCTCTGCGTCACACTTGCACTGATGCTGCAGGGCGGATCTGCGGACAGTAAAGACGACGGGGGTCCGCAGTTTGCCGAGGTGTTCGTGATCATCTGGTTTGGATCCGTCATCATCaccctgaactccaaactgctGGGAGGGACCATCTCCTTCTTCCAGAGCCTGTGTGTCCTGGGCTACTGCATCCTGCCCCTGACCGTGGCCATGGTGGTCTGCAGGCTGGTGCTGCTGGGGGGCTCAGGCATGGCCAGCTTCATCGTGCGCTTCGTGGTCGTCATCGCCTCGTTTGGCTGGTCGACGTTCGCCTCCACAGCATTCCTGGCCGACAGCCAGCCGCCAAACCGCAAGGCGCTCGTGGTGTATCCCGTGTTCCTGTTCTACTTCGTCATCAGCTGGATGATCCTGACCTTCTCCCCGTCGCGCAGCGGAGACACGCAACCCTGAGTGGGCTGTCCGCAGGGCCGGCGCACCGCCCCTCGCGGTGGGGAGGGACAGAGGACCGCGTACCGAGTGACTCatcattattgtcattattattcacCCTCCTCTAATGAAACCCTGACGGTAGATCTGGATTCCCATCGTAAGCGACCTGCATGTTCCCATATCTGACCTggggaggagagacagagagagggaggagacgCCTGCAATACGGACGGATGGATGGGAAGAGTGcgactttgttttgtttagtttgcttCCTTCTCTTGGTTTCTTTCCTCTTTCGTTCGCCTGTGCGACTCGACGAGTTCTGATGGGTGAAATGAACGCACCGTTATATTGCGTGCCGAAGGACCGGTTGTGTCGCTGGGTTTACATAGCGCTCTTAATTTAAAGTTTCTAGTTTAATACATGATTAAGACCCCACTGTGAAGACTGAATTGGGGCCTTTAATTGGGGAAGTTACCAAAACGAATAAACACAATGCAGAAGAGAGGGTTCCCGGGTTCTGAAGGGACTGGGTCTCCGGTGAACCCGGTTCAGATGGGCAGCTGCAGGCACACACAAGGAGTGCACGTCTGAAGACAAACCCAGCTGTTCGTGTAGTTTTGCAGTTCCTGGTTTCCTTCACCGAGCTCCTCCAGATGTTTTAAACACGGGGAAACAGGTgtctttttttcctgctttgaaAGAGatgagttttattatttatttgttgtgtaaATCCAACGTTAGGCCTTATTACACAGTCGTAGTCCCAGTCCTGTGTTGTATGTCGTCAGTGGAGGTGTCTGGTTTAGTAAAGGGGTCTGTGTTATAAGTCTGATCAGCACTATTTTTATATCCATAttgttttaagttaattttgttttgctataaACTTGTTTTATGGACAATATAGTTTTAATTCACTACTTTAGTTTTGCTTTCTGATTAATGTATTGAGTAACGGGTGTTCTAGTTTGATCTTGGTGAAGAGGATGAATCAAGGCTGTGAAGAAGAGGTTTCGTATTTCTCCACTGAATGTCATTTTGATTATATTCTTTCTTTCCTGATTTCCAAATATGAACCAATATGTGTCAGTGTACTTGGTGATGGAAACCTCCCTCCCTTTTCTATTCCAAATCACTTGGGATGTTTGATTTAAGGGTCTTGCTGAAGGAAACGTtaacaaaatgaacaagaaCTAAATTTCCCCCTGAGAAACCGGTCGTTCTTGTGAGAAGCGTCTCTCTCGCCTCCTCTAATCACTTCAAGGATGTATAAACTAATACGACTCCGATTGGCACTGATAGCAGGTCTGAGTGTTTTGAAAGCTGATATAATTGCAACTGAGGGGTTTTTCACACTGATACAGTAAACCCACATACAGACATGCGTGAACAGCTGaggtttgtcattttctttcatataaGAACCAAGTAGTTTGCAAAACTAATCAGCACAGATCAAATAAGTTCTGTTCTGTGCAACAGGAAGGGGATGGATGTAAATCGTTAGTAACTGCATCAGTAATTCTGTTATATAAGAATATAAGGGATGCCTTAATGTGTTGAGTTTGTTTGAGAATCACTTCCCCAGCGCCTCATGGGAAAGTCTTCAGTGTACATAAACAAAGAACAGCATCAGAGTCATGTGTGACCAGAgtgtttattcttgttttactttttaatttggtCCAGATGGAAGCAGACTGAACCCAGAGACACTTCGCTTTCTACATTTCCTTAAGACTGAACGTTTCGGGATACACGTCTGATTGGAAACGGTGTTCGTCTCGATTGGCAATCTGATCCGGCTGCTCCACGGCGCTCCGTGTCGCTGTCCTGTCGGTGCTTCTCACTTCGTCTGGTTTAAGTGTTGATTTGTGCAGCCGGCATGTGGAACGAAATGTAAATGAAGGGTAATACTGAGAATTCATGAATACAATTGTCAAGGCTGACGGGGTCGAGGACCAGCCTTTGTCGGAGGAAATCTGTGCTTTTCCCTGGGGGACAAAAGCAGTGTGGCTTATAAACACGCTGCGCTGTTCACTGTTATCAGCTGCTGTGGGTTCGATGTTTATTACAGCACTGTGCGCAGATCCCACAGTGGCCGGTCTTCAGGCCGTGTCTGAAGGTATAATGCTGGTAGTGGATTGAAAAGAAAGacctttttaaaagctttatgaCAGTAATGTGTTGGAATGTGAGCCAGACAGTGTAAGTGATGCTTCTGGACTCGTGATAAGATCATAGATCGAGTGCTGTGCCTTAATTTCCTCCTTCACTGGGAGGCTTACTGTGCACCTCTATCTCTGCGGTTTCTGTGTGAAGTGTACATGTAGGCCTACCCTCCCACCCTGGTGATGTCATCACTCTGAAAAGCacaaatatttgataaaaaaacaggaaaggacCCTGTCGACGCAGGAATTTACCTCTCGGCACCCTCTGTACAGTATTATTTCCTATTGCTCAATCTGAGCAGAACAAAAAGATGTACCTTCAATTACAAATTTTTGTCTCCGTGACTGAGTACAGTCACTGATAAAACTGACTAAAGACATCAAGGTAGTGGAAAAGCCTCGTGTCCAACTATAAATTGCGAAAGGTAGATgaaatgggaagaaaaatattgcaaaacagCCTATTATGATCTGTGAGTGGTGGGCAGGTTTTCATTGGTTCGGGGCGTGACTGAGGTAGGAAATGTGGCTCAAGATTTCACACAACGAAACCACAGGGTTCCTCCGAAATCCTCACAGATTACTGCACATACTGAAAAGGGGGATTTGTAGTCGGGCTGTCAGTGTGGATCATGTTCCCCAGTTCGGAGCAAGGCTGCCACGGTCTTTTTCAGAGGTGGTCATATTTATACATCATCCCTTTGCAGAATAAAGCTTCTGAGACGGCGGATTTGTAAGCGTGTGTCGTGAAAAGCGTCTGAGAGCTTTTCATTGTCAGAATTATCCCTGGGGATCTGTGGCTCCATTGGATGGATACAGAGTGAATTGATAGCTTCTGGATGTGAATATGAATGGTGCTTCCTGCAGCCGGGGcacgatattattattattattattattattattatta

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K22943 YIPF6; protein YIPF6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104126 lncRNA upstream 62189 2522863 ~ 2525979 (+) True G83443
TU104109 lncRNA upstream 71253 2516259 ~ 2516915 (+) True G83427
TU104074 lncRNA upstream 295127 2278796 ~ 2293041 (+) True G83397
TU104040 lncRNA upstream 366445 2219093 ~ 2221723 (+) True AMCG00021076
TU104037 lncRNA upstream 386609 2201294 ~ 2201559 (+) True G83374
TU104145 lncRNA downstream 9561 2607269 ~ 2607670 (+) True G83459
TU104186 lncRNA downstream 167085 2764793 ~ 2765004 (+) True G83493
TU104190 lncRNA downstream 339777 2937485 ~ 2937685 (+) True G83497
TU104211 lncRNA downstream 489986 3087694 ~ 3087909 (+) True G83516
TU104226 lncRNA downstream 756277 3353985 ~ 3354286 (+) True G83528
AMCG00021083 mRNA upstream 75961 2506216 ~ 2512207 (+) True AMCG00021083
AMCG00021084 mRNA upstream 108136 2457929 ~ 2480032 (+) True AMCG00021084
AMCG00021079 mRNA upstream 211274 2370079 ~ 2376894 (+) True AMCG00021079
AMCG00021080 mRNA upstream 235098 2349679 ~ 2353070 (+) True AMCG00021080
AMCG00021081 mRNA upstream 310740 2248989 ~ 2277428 (+) True AMCG00021081
AMCG00021088 mRNA downstream 55005 2652713 ~ 2670775 (+) True AMCG00021088
AMCG00021089 mRNA downstream 121748 2719456 ~ 2746353 (+) True AMCG00021089
AMCG00021093 mRNA downstream 868052 3465760 ~ 3471536 (+) True AMCG00021093
AMCG00021095 mRNA downstream 986196 3583904 ~ 3587462 (+) True AMCG00021095
AMCG00021097 mRNA downstream 1071350 3669058 ~ 3672076 (+) True AMCG00021097
TU103781 other upstream 1661693 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 1200133 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 1529563 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 1633264 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 4517673 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 4517673 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile