RNA id: AMCG00021094


Basic Information

Item Value
RNA id AMCG00021094
length 1660
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00021094
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3679213 ~ 3682876 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCTCTGGTGCCGGCTGTGTACGTTGGCACTCAATAATCCTCCACATTTCAGTCGAATCACCTGGCTAATTGAGTTGCTTCAAAAACAAGAACTTGAGCCTGTGGTCTCGAAAACCATTTCCTTCTTTCACTCCGTCTCTCCACCCCCGTCCGTCCCCGTAGCTCTCGACCTAGACTCCCAGCACAGATGATCGCCGTCGGTTCCAAACCTTCCAGGAAGAAATACAGGATGTAAAGTGAGGAACGCTCCTGtgaaatatgatttgttttcaggGGAAAGGTGGTTTTACAGGCAGTGAGAGAGGCAGCTCGGAGACCCAGTGAGAGCCAAGTTCCGCATGTGCTGTTTGTGAAAGGGAAGCTTTTTTCATGCGCGTTTCCTGTAATACAGAGCAATCAGTCTgtgctgtattactgtattattactgtactgggggggggcgggggttaGCATGTTGGAGTTGACCTGTGAGAAGAACGGTCTACCTGGAAGAGTCCTGCTGTCCCTTACTCTCATAGTCGCCTTGGCTTTGTGTCTGAGTCTCTTCCTGCTGCATCAAGTAAGTGTTTTAAAGGACGAACTGGAGCAACTCGACAGGGCCGCTCTGTGCACCCGGCAGGCATCGCCCGACGCCAGCAGCCCACGGCCCGAGTCCGAGGCGGAGGAGAGACCCAGCTCTAGTGGCCCCACGGGCTCAGGTTACGATGCAATCGCACAAGGAGACCGATTTCCAGCTCTGAGCTCTTTCTTGAGACCGAAGCGAGAACTGAATGCCTTTGAAAGACAACATTCATTTCTGCAGCTGAACGCCAGGAGGAATGAGAAGCCGATCCGCAGAGGTAATGTCATTAGTATTCCCTGGACTGTTGCTGTGCAAAGAGGAGAAGCCGTGTCTGTGcaggacaataaaataattGTTCTGTTCCTCAATCCCGACAGCGTAATGGGTCACCTGATCCAGAGGAGGAAGTCGAGTGTGTCGGGGACGGAGCCACGCTTCACAGACCTGCTCCTCTGCCTCCAGGAGATGCCAAAAAACAGGAGCGTCAATTCATGCTACACTGCAGGCATTGTCAAACTTGACCAGGACGATCAGCTGGACCTGGTCATCCCTGACCGGCCTCAAGCGGAGATCTCTCTGGAGGCCGATTCCACTTTCTTTGGCATCATACAGCTGGTGTGAGCACCTGGATCAACTGATCAGTAGTCACTGAGAGGCAGAGATGAAAACATTTAGAGAAAACAGCCAGTGGACGATGAGATTAACTTCCTGTAGATCTGCCAAGAGCTGCTCCTGCTCTCCTGGAACAGACACTGGGGACCTTTGGGCATTTCTTTCCACATTTAACTTTCAAGCTGGAAACTTAGATATAATCCAGACAGTGTGTGATTTGTATagttgttttatacatgtataaagtAGGCcattcactttttaattgtCATTCTTAAAAACTAGCCATTGGCCTCCAAACCTTTGTTTAGGTCTCTTGTAGCTGATTAATAatgatattacaatatttttgctAAATTATTCCATCAGTTTTGCAGGCTTTCAGGACTTTCAACGCAATCTTgggattttatgttttttgttttagtcaaagaaacaaacaaacaaagacaattaaaaagacCAGTTGTGTGCATTGTGAAACA

Function

GO: NA

KEGG:

id description
K05476 TNFSF13B, TNFSF20, CD257; tumor necrosis factor ligand superfamily member 13B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104226 lncRNA upstream 324927 3353985 ~ 3354286 (+) True G83528
TU104211 lncRNA upstream 591304 3087694 ~ 3087909 (+) True G83516
TU104190 lncRNA upstream 741528 2937485 ~ 2937685 (+) True G83497
TU104186 lncRNA upstream 914209 2764793 ~ 2765004 (+) True G83493
TU104145 lncRNA upstream 1071543 2607269 ~ 2607670 (+) True G83459
TU104333 lncRNA downstream 106151 3789027 ~ 3789246 (+) True G83621
TU104334 lncRNA downstream 112113 3794989 ~ 3795242 (+) True G83622
TU104335 lncRNA downstream 112468 3795344 ~ 3795611 (+) True G83623
TU104360 lncRNA downstream 252820 3935696 ~ 3935955 (+) True G83645
TU104422 lncRNA downstream 579125 4262001 ~ 4265982 (+) True G83704
AMCG00021098 mRNA upstream 2834 3675079 ~ 3676379 (+) True AMCG00021098
AMCG00021096 mRNA upstream 5179 3673816 ~ 3674034 (+) True AMCG00021096
AMCG00021097 mRNA upstream 7137 3669058 ~ 3672076 (+) True AMCG00021097
AMCG00021095 mRNA upstream 91751 3583904 ~ 3587462 (+) True AMCG00021095
AMCG00021093 mRNA upstream 207677 3465760 ~ 3471536 (+) True AMCG00021093
AMCG00021099 mRNA downstream 3264 3686140 ~ 3689745 (+) True AMCG00021099
AMCG00021100 mRNA downstream 21293 3704169 ~ 3708296 (+) True AMCG00021100
AMCG00021102 mRNA downstream 42128 3725004 ~ 3731718 (+) True AMCG00021102
AMCG00021103 mRNA downstream 58605 3741481 ~ 3749096 (+) True AMCG00021103
AMCG00021104 mRNA downstream 74268 3757144 ~ 3757692 (+) True AMCG00021104
TU103781 other upstream 2752738 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 114965 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 444395 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 548096 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 3432505 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 3432505 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile