RNA id: AMCG00021102


Basic Information

Item Value
RNA id AMCG00021102
length 3214
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00021102
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3725004 ~ 3731718 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCCGAACACGCCAGGGGACAGGTCTGTCATGTGCTGGGTCAAGGTCTGCGTGTGGTCAGTCTCTCACGTCTTAACCACAACATCCAAATGTTTCGTGTTTTGCACTGCTTTCCAATTCCTTGTTGCAGGGGCTAATCTGGTTTAAAGTATAAAGCAGATTCAATAACTATAAATCCTGTACATAGTAAATAAAACGCTGTCGCTTGTATGTAACTGTTGAAATGTCCGTCCGCCGAACCCGGAAACGAGTAACCGGAAGCCGCGGAGGCCCGCGCATGCGCTGACGAGGACGCGCTGACGAAGATGGCGGCTGCAGAAAGCAACCTCGACAAGCCCAAATCCGACGCGGAGTCGCCGAAGCTGTCCGAGCTGCTGGACTCCGGCTGGAAGGCGCTGGACGAGGTGGACAGCACCAACGAGCCCACCGGGTCGCACCCGATCCAGGTGAAAATCAAGCGGGCGATTCTGCAGTTAGAGGAAGCCTCTCGGATGGCCACCCAGCTGGACTTGTTCAGCCGCAatgaggagctggaggagatcGCCACGGCCGACCTGAAGTACCTGCTGCTGCCGGCGCTGCTGGGCGCGCTGACCATGAAGCAGGTGAACCTGGCGCAGCGGCTGGAGCAGGTGCGCAAGGCCCGGGTCTACTTCTGGGACTTCCTGAAGAGGAGCCAGGACTACGACATCATGAAGTTCGAGCTGCCCAAGCCGGCGGGCGAGCCGTCGGACGAGGCGGCGGACGAGGCGGCGGAAGAGCTGAGCAGCCGGCCCCCCACCACCAACACCTCCGACCTGATCGCCATGGCTGTCCGGAGGCAGGCCAAAATAGAGAGGTATAAACAGAAGAAGGAGACGGAGGCCAAGCTGTCTGAGATCAAGGCGGCCGTGGACAGTGGGCAGGCAGAGGACGAGATCGTGAGGGACTTCTACCTCCTGAACGTGCGGAGGTGGGTCTCCATCGCGGTGGAGGAGATCGAGAGCATCGACCAGGAGATCGAGATCCTGAAGAGGATGGAAGGACTGAAGAAGaaCGCTGCCCAGCCATCCCGCGCCCCCCACCACAGACCCCCGATGAAGCCGTTCATCCTCACCAAAGACGCGGTGCAGGCCAGGGTGTTTGGTGCCGGCTACCCCAGCCTCCCCACCATGACTGTGGACGACTGGTACGAACAGCACCGCAAACAAGGAATCCTCCCTGACCAGGGGATCCCCCGCAGTGCAGCCGACCTGGATAGCGAGGAGCgcgagaaggaggagaaggagcgCCAGATCGAGAACGACGACGAGGAGGCCCTGCAGAAAGCGCGCGACTGGGACAACTGGAAGGACACGCACAGGCGGGGCTACGGCAACCGCAAGAACATGGGCTgagccccccggccccccgcCACCCTGCTGGACACCTCGCCCCCCGCCGGGACTCGGCCCACAGTCCTCACCAGTGTTTAATAACCTTCAGCACCGTGGCACCGTGGCGCAGAGACGCCGGCTCAGACCGGGTGGCCGATGCATCGATTTGCCTTTGGTGAAGAGATTAAttgaccatttttattttaggttagTGACTTTCCAGAGATTTGCCGTCACTGCTCGCCTCTTCTACAGTGTAGgtcgtttgtgtgtgtaaaatagtGGATCATGAGAATGGGAATGTTACCTCTGTATGGAAAATACCGCTTTTCTCTGGAGAAACGGTTGATTTTCAATGACTATTAGCAGATGTTGAGCCAAGATCATATGAAAGCAGGTCCATTGCCTTCTGATGTGAACATTTCTCAGTGGCTTACTGTTCTGTCTTTGCTTCTCCACAACCGGGTCTTGCTTTGATAAGTGGCTCCTTGGCTTTGCTAATGCTGTAACGTACGTTCAAACATGTCTGTCTGAAGGAAATCGACTCGGTATTTGTGTTTGGGAGTTAGCAGATGTGTAAGTTGTGTAAAAAGCCATTCAGATTGCCATAAGAGGAATCGTGGGACAGGATGTTTTATTGAGTTGCAGTAGTCCCCGAGTGCGGTGAATACTAGAGCACACCTCATGCCGTCTTGCACAGACCATCAGAGTGATTCATCGTGGAGAACGAGAACCATAGTGGTGTTCCTTAGATGTGTTAGCActtatatattaaaactaaagtGGACTCTATTTATTAAGGGTTTTATATGCAAGTGTGGCTACCATTGTGCTTTAAGAGGAATAACGAGAGCATGGCAGTGCGAGAGGTTTTTAATCTGGTGCTGAAGGTACCAAATAACTCCCCGAACCGGACTTTCCTTTATGAACGCGTACAAGTCCTTGATAAATACAGTCCTTCATCCATCGAAACATGACACATACGAATGCGGAACATTAAGTATCAGATTCCTGCCGATTTGTTACATTTGGGTTAGTTTAAGCGTGTACGAGGACAGATCTGTTTTGTGTGAAATGGATCGTTGGCATCTGATTGCACTagcaactgtatttaaaaacaaatcctacaGGTGACGTTTTGTAAAGACTGCAGTTGTGCTTTATCAGactaattacatttcattttgtacctgtgtttaattattgttgGTCCGTAAACAGATTGGAATTTCAAAATCGGTTTCAAATTACTAGATATAAGTTACTGAGCCTTTAAAATACTGCTGTTTGTCTTTGATCATATGTTCACAAACTTCAGACAATTACAGCTGTGGTTTTGAAAGCCAGCGAGAAAATGCGTCCCGTCCAGTTAAGAAGGGATACATCTGGTATCCGCAGTTAATCTAAGGAATCTTGATATCTTTTAATTACTAAATTCAGTGGCCTCTCTATTTTGAGGTCGTATCCACCTGCAATGGATGTTTTTGAGCCAAAAAAAGAAATCGACTTTCTTTTGTGAAGAAACTGAAAGCTGCAGAATTTTGGACACTGTCAAAAATTCTCTGTATAAATTGTTTCCTTTtgctgaaacatttgtttttgagttggtgcagttttttaatatattatgctgacatgtttgttgtattttacattctattgtttctttaaataaaggGGTTAAACAATGTTTATGTGCATTAGTTGTaaatggtatttatttacttgtccCACATTCATTCACTATTTTAGGTCTTAGAATGTCCTGTTATACTGAGTGTAAgatctgttgtatttatttttatttgcaatatattttaggtattttatattaagtgtATGGATCAGCAAATTATTTT

Function

GO:

id name namespace
GO:0009966 regulation of signal transduction biological_process

KEGG:

id description
K17606 IGBP1, TAP42; immunoglobulin-binding protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104226 lncRNA upstream 370718 3353985 ~ 3354286 (+) True G83528
TU104211 lncRNA upstream 637095 3087694 ~ 3087909 (+) True G83516
TU104190 lncRNA upstream 787319 2937485 ~ 2937685 (+) True G83497
TU104186 lncRNA upstream 960000 2764793 ~ 2765004 (+) True G83493
TU104145 lncRNA upstream 1117334 2607269 ~ 2607670 (+) True G83459
TU104333 lncRNA downstream 57309 3789027 ~ 3789246 (+) True G83621
TU104334 lncRNA downstream 63271 3794989 ~ 3795242 (+) True G83622
TU104335 lncRNA downstream 63626 3795344 ~ 3795611 (+) True G83623
TU104360 lncRNA downstream 203978 3935696 ~ 3935955 (+) True G83645
TU104422 lncRNA downstream 530283 4262001 ~ 4265982 (+) True G83704
AMCG00021100 mRNA upstream 16708 3704169 ~ 3708296 (+) True AMCG00021100
AMCG00021099 mRNA upstream 35259 3686140 ~ 3689745 (+) True AMCG00021099
AMCG00021094 mRNA upstream 42128 3679213 ~ 3682876 (+) True AMCG00021094
AMCG00021098 mRNA upstream 48625 3675079 ~ 3676379 (+) True AMCG00021098
AMCG00021096 mRNA upstream 50970 3673816 ~ 3674034 (+) True AMCG00021096
AMCG00021103 mRNA downstream 9763 3741481 ~ 3749096 (+) True AMCG00021103
AMCG00021104 mRNA downstream 25426 3757144 ~ 3757692 (+) True AMCG00021104
AMCG00021106 mRNA downstream 26881 3758599 ~ 3760890 (+) True AMCG00021106
AMCG00021101 mRNA downstream 30363 3762081 ~ 3773308 (+) True AMCG00021101
AMCG00021108 mRNA downstream 72493 3804211 ~ 3809015 (+) True AMCG00021108
TU103781 other upstream 2798529 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 66123 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 395553 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 499254 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 3383663 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 3383663 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile