RNA id: AMCG00021103


Basic Information

Item Value
RNA id AMCG00021103
length 2279
RNA type mRNA
GC content 0.59
exon number 10
gene id AMCG00021103
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3741481 ~ 3749096 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGTGGCCTGTGGGAGCGGCGCGGTGCTCAGGAACACGCATGCGCAGCGCGGCGGCGGCTCCCGGCCTTTTCTCTGATTTTGACACAGCGGGTTTAACACGTGTGAGTGCACGATGGCAGGAGAGACGCTCTCTGACCCCGGGGACGAGCACAGGCGCGCCCTGGTGTACCGGCTCGTGCTGCTGCAGCAGGCACGGAGCTCCGTGGAGCGCGAGCTGAGGGCCTTCACGGAAACGGCCACCCGAGCGGTGCAGATCTTCCTGGACCGACCCGAGACAGGCGCGGCGCCGGACTGCCTGAGCATCTCCATTGGCCTGGAGGAGAGAGTCCTGGTCCTGCAGCAGCTCTCGGTCTTCTTCCAGGACCTGCGATCAGTTTCAGGCCCAGAAAGTTGCTCAGCATTGATCCCAAAGCGTCAGCCTCCCTTCCCTGCTCTTCGGGGCGCATCTGATGAGAGAGGCATCCTGAAGTTTGGACCCATGTTGAGAAACGTTCTGATGGCCACGTCGATCACGAATGCCGTTCAGACGCTAGGAGCCATGCTAGCGTTAGGGCAGATCCGAGGGCTCCTCACTCCTCACACGAAGATGGTGTCTTGCAGTACGTCCACGTACTTCAACCTCAAGAAGGAAGTGTTTACAACTCCTGGTTTCGAGAAGGAAAAGGTGCGAACCGAGAGGGCTGGCGGTCGTGTCGCACCACAGATGGTCGTGCCGTTGATGTCGGGCGAAAGCTCTCAGTCCGGGATCGGAGGCCCTTGTGCAATAATGACCAAGACCGTCAAGCCCAAGATGAGACGAGGACCAGCTTGTTTGTTAGACATACATTTGGGTAATGGTCTGGAAGTGAACCACCAAAAACAGACCTCGTCCCAGCTGATCTCTTTTCTCCGCACGTATTATGAAAGTGATCATGTGACTGGAGTGGATCTCTTTAAAGGAAACCCAGAAGCCCAAAGTGCTCTCCCGATGGAGGTGACGGTCGCACCGCTGGACTCGGTTGACCACCAGCGCACTTTGGAAAATGAGTTGTCAGCGGCAGATGGCTTGAAGCCGCAACGCCTGCCCTGCCTGGGATGCTGTGTGCCTGTCTTTAAGATCAGAAGGACCAGTAAGGACGGCGTGTCCATCTACAGATGCACAATCGCCACCAAATCTGAGTTGTGGGACATCTGTGATATCTGCATTGAGGAAGCTGCTCTTTCTAACTGCCTTTTGGAGCAAGACCTTCCACTTCCTGCAGAAACGCGCAGCGGTGGTCATGAGGAGCCTGAGGTCGCGCCAGGCTGTGGCGGCCCCAGGGGGCCACGGCTTTTGACTGCAGTCGAGGTCAAAGAGGCGGAAGTTGTTGATTCCACTCTGGGGAAGGAGGGCACCGGTGAGAAGAGTGATGGAGACGTCACAATCCCAGAATTCAAGATCCGGAAATTCGAGGAAATGGAGGTGACCGTCACCCATGTGGACAGCCCTGCGAGCTTCTTCATCCAGAGCGCTGGAGCTGAGCTGCAGGAACTGACTCGGAAGCTGAATCAGGACCGCAGCTCCTCCTGTGCGCGGATTAAATGCGTCCCTGATATCGGAGCCCACGTTGTCGGCTGGTTCCCCAGACAGCAGCTGTGGTGCCGGGGAGTTGTGCTCAAGATCTGTGGGATGCAAGGAGAGGTGGCGACGGGTCGGTCCCATGAGCGCCTGCACCGCGTCGAGGTGGAGGTGATGAGGATCGATTTCGGAGACGCTGCACGGCTGGTGCTGGTTGACCTGTGGGAGCTCAGCGCGGAGCTGGCCGCTGTCCCCAGGCAGGCTCTGTGCGTCTCGCTGGCAAACGTGTCCCCGCTCAGCGGAGGGCAGTGGACGTCGGAAGCGATCAGCTGGTTCAGAGAGAAGGTGGGAGGCCGGAAGCTCTACGCCCGCCTGTATCCCACAGACGGCGCCGTGAAGGCCGAGCTGAGAGGGGCTTCGGTTTCACTGCAACTGACTGAAAACGGCCACGCGACGCATGACCGCCTGAGGAGAGCCGCGCACGACGGTGGGCTGCTGTTACGAGCTGTGCAGTCCGTAGAATCCAAGGCCGACAGAACCGAGCGTCGGCGCAGTGGGAGAGACACATCCTGTCCCGTTTCTCTCGGCACAGAGACCCACCGACTTCCACCTTCTGTCTCGGCTGACGGTCTGTGTACGGCGCTGCGCAGAGACCCGGGATCAAAGGACACGGATCACAACCATCGCAGCTGGTTTGGCCTGGAATGGATTCAGCCTCCGCTCTTCTCGGTCCCTTGCTGA

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006269 DNA replication, synthesis of RNA primer biological_process

KEGG:

id description
ko04110 Cell cycle
ko04111 Cell cycle - yeast
ko04113 Meiosis - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104226 lncRNA upstream 387195 3353985 ~ 3354286 (+) True G83528
TU104211 lncRNA upstream 653572 3087694 ~ 3087909 (+) True G83516
TU104190 lncRNA upstream 803796 2937485 ~ 2937685 (+) True G83497
TU104186 lncRNA upstream 976477 2764793 ~ 2765004 (+) True G83493
TU104145 lncRNA upstream 1133811 2607269 ~ 2607670 (+) True G83459
TU104333 lncRNA downstream 39931 3789027 ~ 3789246 (+) True G83621
TU104334 lncRNA downstream 45893 3794989 ~ 3795242 (+) True G83622
TU104335 lncRNA downstream 46248 3795344 ~ 3795611 (+) True G83623
TU104360 lncRNA downstream 186600 3935696 ~ 3935955 (+) True G83645
TU104422 lncRNA downstream 512905 4262001 ~ 4265982 (+) True G83704
AMCG00021102 mRNA upstream 9763 3725004 ~ 3731718 (+) True AMCG00021102
AMCG00021100 mRNA upstream 33185 3704169 ~ 3708296 (+) True AMCG00021100
AMCG00021099 mRNA upstream 51736 3686140 ~ 3689745 (+) True AMCG00021099
AMCG00021094 mRNA upstream 58605 3679213 ~ 3682876 (+) True AMCG00021094
AMCG00021098 mRNA upstream 65102 3675079 ~ 3676379 (+) True AMCG00021098
AMCG00021104 mRNA downstream 8048 3757144 ~ 3757692 (+) True AMCG00021104
AMCG00021106 mRNA downstream 9503 3758599 ~ 3760890 (+) True AMCG00021106
AMCG00021101 mRNA downstream 12985 3762081 ~ 3773308 (+) True AMCG00021101
AMCG00021108 mRNA downstream 55115 3804211 ~ 3809015 (+) True AMCG00021108
AMCG00021107 mRNA downstream 92504 3841600 ~ 3844289 (+) True AMCG00021107
TU103781 other upstream 2815006 918006 ~ 926475 (+) True AMCG00021049
TU104336 other downstream 48745 3797841 ~ 3798783 (+) True G83624
TU104390 other downstream 378175 4127271 ~ 4129216 (+) False AMCG00021113
TU104395 other downstream 481876 4230972 ~ 4233756 (+) False AMCG00021114
TU104813 other downstream 3366285 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 3366285 7115381 ~ 7121237 (+) False AMCG00021150

Expression Profile