RNA id: AMCG00021105


Basic Information

Item Value
RNA id AMCG00021105
length 1071
RNA type mRNA
GC content 0.58
exon number 4
gene id AMCG00021105
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 3733756 ~ 3736353 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGAACCGTCACCCTGGGGCTCGATCTGTACCACACTCTGTTGAAAGATGCCTCTCTGAAGACCGAAAACATGGTGGCCTCCTCCCTCGGGGTGATGACTCTGGGTGCCAAGGACAGCACGGCCAGCCAGGTGAAGTCTCTTCTCAGCGCTGACCTCCATGAGGACACGCTCCACCCGGCCTTCTCCGAGCTGCTGGGCGAGGTGACCAACGAGACGACCTGGAAGATGGGCAGCCGCGTTTACGCCTCCGCCCGTCTGAGTCAGCAGTTTGTGGAGAAAAGCAAGAAGCACTACCGGCACGATCACTCCGAGATCGACTTCAGGGACAAGAGCAAAGCCCTGGAGTCCATCAACCAGTGGGCGTCTGAAAACACAGCAGGCCGAGTGACTGAGGTCACCAGGAACCTGCCAGGGGCTGATGGGGCCATGTTTGTCAATGCCGTGTACTTCAAACCCCATTGGGGGGAAGCCTTCCACCACGCCATGGTAGATAAGAGAGGCTTCCTGATATCTAAGAGGCAGTCGGTGTCGGTGCCGATGATGCATCGCACAGTTTTCTATAAATACTACGAGGACGAGGCCAACCAGCTGCAGGTTGTGGAGATGCCCCTGGGCCTCAAACAGACCAGCATGCTGATCATCATGCCTTTCCACGTGGAGCCCCTGGACAGGCTGGAGAAGATGCTCTCCAAGGAGCAGCTCAGCGCTTGGTCCACCTGCATGCAGGAGAAAGCAGTGGCTGTGTCGCTGCCCAGAGTGACTGTGGACAAACACCTGAAGGAGCTGGGTCTGGCTGAAGCCGTGGATAAAACCAAGGCAGACTTCTCTGGCTTTACCGGACGGAGAGACCTGCATCTCTCTGCCTTCCTCCACACCGCTGCCCTGGAGCTGGACACCGAGGGCAACCCCTTCGACGAACAGATCTACGGCCGACAGGAGCTGAAGTCCCCCAACCTGTTCTACGCCGACCACCCTTTCATtttcctggtgcaggacaagaAGAGCGGCTCCATCCTCCTCATCGGCAGGATCGTCAAGCCCAGCGGCGACGGGAATCATGACGAGTTATAG

Function

GO:

id name namespace
GO:0030162 regulation of proteolysis biological_process
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:0005737 cytoplasm cellular_component
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104305 lncRNA downstream 15566 3710153 ~ 3718190 (-) True G83596
TU104238 lncRNA downstream 311310 3422202 ~ 3422446 (-) True G83539
TU104212 lncRNA downstream 645801 3087694 ~ 3087955 (-) True G83517
TU104207 lncRNA downstream 677604 3036297 ~ 3056152 (-) True G83512
TU104192 lncRNA downstream 779143 2941583 ~ 2954613 (-) True G83499
TU104319 lncRNA upstream 10805 3747158 ~ 3747512 (-) True G83607
TU104320 lncRNA upstream 12305 3748658 ~ 3750902 (-) True G83608
TU104383 lncRNA upstream 384896 4121249 ~ 4121486 (-) True G83667
TU104389 lncRNA upstream 389138 4125491 ~ 4125701 (-) True G83673
TU104504 lncRNA upstream 966902 4703255 ~ 4751235 (-) True G83761
AMCG00021092 mRNA downstream 445016 3287994 ~ 3288740 (-) True AMCG00021092
AMCG00021091 mRNA downstream 468545 3255379 ~ 3265211 (-) True AMCG00021091
AMCG00021090 mRNA downstream 1014837 2677585 ~ 2718919 (-) True AMCG00021090
AMCG00021086 mRNA downstream 1150139 2583330 ~ 2583617 (-) True AMCG00021086
AMCG00021085 mRNA downstream 1156802 2522860 ~ 2576954 (-) True AMCG00021085
AMCG00021110 mRNA upstream 43468 3779821 ~ 3801007 (-) True AMCG00021110
AMCG00021111 mRNA upstream 74058 3810411 ~ 3813043 (-) True AMCG00021111
AMCG00021109 mRNA upstream 80340 3816693 ~ 3825283 (-) True AMCG00021109
AMCG00021115 mRNA upstream 500684 4237037 ~ 4260026 (-) True AMCG00021115
AMCG00021116 mRNA upstream 525676 4262029 ~ 4281357 (-) True AMCG00021116
TU104173 other downstream 1051994 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 1274377 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 1755788 1973160 ~ 1977968 (-) True G83313
TU104502 other upstream 1012428 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 2808139 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 8790740 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 8983511 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 9890982 13627335 ~ 13627747 (-) True G84952

Expression Profile