RNA id: AMCG00021122



Basic Information


Item Value
RNA id AMCG00021122
length 333
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00021122
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4463840 ~ 4465658 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCTCTTTTCCTGGAGCCGCTCTCTACGCTAGTAACCGTGGATGGCTGTATAGACTGGTCTGTGGATCTGAAGAAGTACCGCGTGTTGGCAGGAGAACCGGTGCGTGTCAAGTGTGCGCTCTTCTACAGCTACATCAGGACTAACTACTCAATGGCCCAGAGTACAAAGCTCAGGCTTATATGGTACAGAAACAAGGGAGACTCAGAGGAGCCTATAATATTCTCTGGACACAGACTTAGCAAAGAGGATGACTCGGTCTGGTTTCGCTCAGCAGAGTTGCAGGACAACGGATTTTATACCTGTGTTTTAAGAACCATCTCAATTGTCTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104389 lncRNA downstream 338139 4125491 ~ 4125701 (-) True G83673
TU104383 lncRNA downstream 342354 4121249 ~ 4121486 (-) True G83667
TU104320 lncRNA downstream 712938 3748658 ~ 3750902 (-) True G83608
TU104319 lncRNA downstream 716328 3747158 ~ 3747512 (-) True G83607
TU104313 lncRNA downstream 728633 3734991 ~ 3735207 (-) False G83602
TU104504 lncRNA upstream 237597 4703255 ~ 4751235 (-) True G83761
TU104507 lncRNA upstream 273438 4739096 ~ 4739884 (-) True G83764
TU104518 lncRNA upstream 356400 4822058 ~ 4859229 (-) True G83773
TU104580 lncRNA upstream 1509816 5975474 ~ 5975781 (-) True G83833
TU104586 lncRNA upstream 1798678 6264336 ~ 6264571 (-) True G83839
AMCG00021121 mRNA downstream 11001 4451684 ~ 4452839 (-) True AMCG00021121
AMCG00021119 mRNA downstream 89785 4359792 ~ 4374055 (-) True AMCG00021119
AMCG00021120 mRNA downstream 112754 4349252 ~ 4351086 (-) True AMCG00021120
AMCG00021117 mRNA downstream 127128 4292591 ~ 4336712 (-) True AMCG00021117
AMCG00021118 mRNA downstream 172119 4282351 ~ 4291721 (-) True AMCG00021118
AMCG00021125 mRNA upstream 262715 4728373 ~ 4737214 (-) True AMCG00021125
AMCG00021134 mRNA upstream 1931970 6397628 ~ 6421738 (-) True AMCG00021134
AMCG00021136 mRNA upstream 1983765 6449423 ~ 6450172 (-) True AMCG00021136
AMCG00021135 mRNA upstream 2072884 6538542 ~ 6542302 (-) True AMCG00021135
AMCG00021141 mRNA upstream 2193879 6659537 ~ 6670212 (-) True AMCG00021141
TU104173 other downstream 1782078 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 2004461 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 2485872 1973160 ~ 1977968 (-) True G83313
TU104502 other upstream 283123 4748781 ~ 4751235 (-) False G83761
TU104623 other upstream 2078834 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 8061435 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 8254206 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 9161677 13627335 ~ 13627747 (-) True G84952

Expression Profile