RNA id: AMCG00021123


Basic Information

Item Value
RNA id AMCG00021123
length 2843
RNA type mRNA
GC content 0.54
exon number 12
gene id AMCG00021123
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4752179 ~ 4760646 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gtgtttatttgtataattgtaaTAAGACCAGATGTACTGTACACTTGCCTTTAAAATTCGCATAGAAAAGTGTATGGTCATTGCCAAGCATGATGGCACAAAGCCTGCAGATTTGATTTAGACAGGAGCAGCAGCATCTGCATTAGCAATCCCAGAGCTGCAGCTGGCCCTGGTGCAGGCGTGCACGAAAAGTTTTTAACCCGAATAATGCCAGGCTGCTGTTAATAACACGGCTGCATTTTCATACATGCACATGTAAGTTTACAATACATCGAAAAACGCTTAAACtggaagaatttaaaaaatgatacaaaaagcacttgttttgtAACAGTTTTAAGACCTGTCCAATGAGAGCCGCTGACGGGGGTCACATGGTGCCGTTTATGTAACACTTTTTCTGCTCCGGATCAGTACCTCAAGCGCAGCGATGGGTGTTCGCGGTGCGTGTGACCAGGGCAGGAGGCGAGGTGTGGACAAAATGACACCAGCACAGTTATGTCTTAATAAACTCTTATCCCCAGACCAGCACCAATGAGCTCCATCCCCGCAGCGCCGCTGGCCGCTCAGGACACGGAGAGCATGGACAGCCGGGCCATGCTGGAGCTGGCGGCTGAAGCCTTTCGGGCTGGAAACTTCGAGCTGGCCGCCGACATCTACGAGTGCCAACTGCGGGACTCGGGCGAGCACGGCGCCCCGCAGGAGCTGCTGCTGAAGCGGGCGGACGCGCTGGCGTGCGGGGGGCGGCTGTGCGACGCCTTCGAGGTGTACCAGCAGGCGTCCCGGCTGGAGCGGCTGCGCCCGGGGCAGCTGGACAGCCTCATCGAGTGTCTCATCGGCAGCATCCGGAGTAAAGAGGGGCTCGCCAGCCCCATGTGCGTCCAGGAGCCCGGCGCTTTCGAGGCTTTCACCTGCCGGATCTGCTTCGGATTCCTGTACGAGCCCGTCACCCTGCCTTGCGGACACTCGTTTTGCAGAAAGTGCCTGGACCGGGAGAGGACGCCCGTGTGCTGCCGACACTGCGGGGACAGCGCGAAACTCGCCGACATCCAGAGCTACAGAGTCAACGTCATCCTCAGCAACCTGCTGTCCAAGTGGTTCCCCGCCCAGCAGCGCGCCGTGCGGCTGCGGCAGGAGGGCAACGCGCTGTACGCGGAGAAGCGAGTGGAGGGCGCCTGGGAGAAATACAGCGAGGCGGTACAGCTGGCTCCCAGGGACCATGTGCTGTTCAGCAATCGTTCACAGATCAACTCCAGTCTAGGAAACTTTGAAGAGGCGCTGAGCGATGCAGAGATGGCGTGCAGGCTTCAGCCTCTTTGGTTAAAGGGACGTTTAAGAAAAGCACAAGTTCTGGCCACTCTTAGGAAAACGGAAGAAGCTTTAACTGAGTACTTGTTCTGCATTGCTCTGGACCCAGAAAGCAAATTGGCAAAATCTGAAGCTCAAAAGCTGTTGAGTGATCTGTTTGCTCCAGTGCCGGATAACGTCCAGGAGAGAATCCCCAACTGCATCAGCCTGCTGTCCGGCCGAATGAGATTAAAGGGAAATGCACTGAACACTTTGAGTTTAAACGGTAGACCCAGCACCCCGAGGCTGTGTAAGGAAAGTATGAAGAGTAATAACAGCATAGCCCAACAGGAGAAATCGAAGTCAACTCTATCTGTCTGTCCCAGGAAAGCATCCGATGCAACGACCCAGAGGTTTCCATGTTCTGAAGACAAAGGCAACAGCAAAGACTTTTCCAAAACCTGCCACCCGACTGTCATTGACAGGCGCTGCCTTCTCAAACGGAAACACAGCTCAGAAGATGAAGACAAGGCAGAAAACATCGAAGAGTTGTGCAAACACGTGAAATCAGAAGCCGTGCTGAAGGAGACGTCGGCCCCCTGGTGCTCGGTGGTCCGGGACCTGATCGATGCCGGTGACCTGGAGTGCTCTCTGTGCATGAGACTGTTCTACGAGCCGGTCACGACTCCCTGCGGTCACACGTTTTGTCTGAAGTGTTTAGAGAGGTGTCTGGACCACAATGCGAAGTGTGCTCTCTGCAAGGAGGAACTTTCAGAGTACCTGGCCCAGAGGCAATACAGCAAAACCGTTCTGATGGAAGACCTCATCGCTAACTACCTGCCAGAGGAGCTtgtggaaagaagaaaaatctatgaAGAAGAAATGGCAGAGCTATCCAATTTGAATATCAATGTGCCTATATTTGTGTGCACCATGGCCTTCCCCACCGTTCCCTGCCCTCTGCACATCTTTGAGCCCTGCTACCGGCTCATGGTTCGGAGGTGCATCGAGACTGGCACCAAGCAGTTCGGCATGTGCATCAGCGACTCCGTCAAAGGGTTTGCGGATTACGGCTGCATGCTGGAGATCAGGAACGTGGAGTTCTTTGCGGATGGACGCTCTGTCGTCGACACGATTGGGAAGCGGCGCTTTAAAGTGCTGCAGCACAGCCAGCGTGACGGATACAACACCGCCGACATCGAGTATCTGGAAGACAAGAAGGCCTTAACTTGGATCAACTCCCTCAAGTCCGAGCAGAAGGAGAGGATCTTGGGGCATTTTGGACCCATGCCACAGAAGGAGCCCGAGCCACAGGTCAGTCCCAACGGGCCCTCGTGGTGCTGGTGGCTCCTCGCCGTCCTGCCCTTGGAAGGGAGAGCCCAGCTGCCGTTCCTGGCCCTGACGTCCCTCAGAGACCGACTCACAGGCATCCGCAGGGTCCTGCTGTTCATGTCCCACAACCGCTCCCGGTGACCGACCGTCCGCCTGCACTCGCTTGTTTTTAAGACCAAACTATAAATAgccttttttgtaataaaagaagaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104481 lncRNA upstream 21235 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 459815 4292126 ~ 4292364 (+) True G83716
TU104432 lncRNA upstream 465579 4280108 ~ 4286600 (+) True G83710
TU104422 lncRNA upstream 486197 4262001 ~ 4265982 (+) True G83704
TU104492 lncRNA downstream 57451 4818097 ~ 4818329 (+) True G83752
TU104599 lncRNA downstream 1783885 6544531 ~ 6546601 (+) True AMCG00021133
TU104675 lncRNA downstream 1882536 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 1900083 6660729 ~ 6662819 (+) True G83904
TU104690 lncRNA downstream 1918557 6679203 ~ 6681917 (+) True G83914
AMCG00021124 mRNA upstream 552 4739141 ~ 4751627 (+) True AMCG00021124
AMCG00021114 mRNA upstream 518382 4202711 ~ 4233797 (+) True AMCG00021114
AMCG00021113 mRNA upstream 622806 4127070 ~ 4129373 (+) True AMCG00021113
AMCG00021112 mRNA upstream 836535 3906153 ~ 3915644 (+) True AMCG00021112
AMCG00021107 mRNA upstream 907890 3841600 ~ 3844289 (+) True AMCG00021107
AMCG00021126 mRNA downstream 84105 4844751 ~ 4848172 (+) True AMCG00021126
AMCG00021127 mRNA downstream 130603 4891249 ~ 4894563 (+) True AMCG00021127
AMCG00021128 mRNA downstream 1008521 5769167 ~ 5787583 (+) True AMCG00021128
AMCG00021129 mRNA downstream 1121270 5881916 ~ 5882834 (+) True AMCG00021129
AMCG00021130 mRNA downstream 1205842 5966488 ~ 5970373 (+) True AMCG00021130
TU104395 other upstream 518423 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 622963 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 953396 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 3825704 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 2354735 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 2354735 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 3871081 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 4655621 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 6202502 10963148 ~ 10987174 (+) True G84657

Expression Profile