RNA id: AMCG00021124


Basic Information

Item Value
RNA id AMCG00021124
length 1696
RNA type mRNA
GC content 0.43
exon number 8
gene id AMCG00021124
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4739141 ~ 4751627 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTCAAACACGGAAACACAAAACTTGTTTAATAACAGACTGGTCGGTGTTTGGGATTTCATtgacattgcattgcattttggaTGAGAGAAAACGAacaactgaaacagaaaagccGATGGGAACGTCACACTAGATTATCGGATCTATGTTTGGTGGCAAGAGCTGGAAGAAAATCGCTTTGCTTGGACGTGTGTCGGTGAGTCAGGGAAGCAGGAGGCTCGGCAGCCATGGCGGTCcccggcagcagcagcagggcagCCCCGTCCCAGAGCGCCGACAGGAGCGGCTTCCTCGGAGCCAGAGCCCCCGCCGAGGTGGACATCATGGCCAAGCACCTGAAGGATTTAGATAAAGAATTATTCAGGAAGATACTGAAAGCCGTTGTCGGTGCTCTTGAAGGAAAGGACTGTGCCGAAGCGGTCCGGGTGGTCTGTGACTCTGGAGCTCTGTCTGAGGAGCAGCTCCGCTTCATCATCGCAGGGATGTATGCGCTTCTCAGGGAAGCATTGCGTCTCCCTGCATCGTCACTAAAGCAGGAGgtctTTAAAGAAGATCTAAGGGATCTGAgGTGTAGTATAGGTGTCGAAGTCAGAGCACATCAGGCGAACgatgaggaggaggacgacAAGTTAAGCGAGCTGGAAAACAATAGAACAGAAAGGGCAGCAGAGGGGAAGAAACCAGCTCTGATATCAGAGGAGTTCATTGTTGACTTTGCCAGTGTGGTGTTTGGCAACAGACGCACAGCACTCGAGGCTGCAGCTGCACGGCAGGGCCCTCGCTTACCAGGCATTGAGGATTTCCGctccTTGTCCCGTGCCTTGCAACCTTCGATTCTCATGCAGATGAAGTTAACGAATGGAATCCCCCATCGCTTTGAGgtacCAGTGTCCAAGTTCCAGGAACTCCGCTACAATGTTGCccttattttgaaagaaatgaaTGATTTGGAGAAAAGAAATGTCCTGAAAATCCAAGACTGACCTCTTTCTGCCATTTTTAACAACAGTGGGGTGGATCTGATGGGTCTTTTTATAGCCATGAATACGGAAGTTAATGatatgtttatacatgtttaGAAAAGTGTAAGCTAAATCTTTTTGATACCATAGCACCTCAGCAAACTGCATCACCAGAACAAGTCTCTGTTCTAATTTTGAATTCTGAACtgttgagaaaaatacaaaatgaatttaTTCCAACACTTCTTGAGCAAATAAACTTGGTTTACCTAAAACTGTCCAGCAGCAGTATTCATTGATATCCATCTGTTGTACTTTTATAATGCTGTGATGCACACATCTACAACTACAGTGATATTCctattttaaatccttttaaatttgtaaaCTTGTTACTtggggaaaatacatttcttttgtgCTGTAAATAAATGCCTATATATGTTCTCAACTTCTATATAAAATGCCCAGTCTAGAAGGTAGCTTTTCCCTTGTTATTGTTACACAACCCCACAGAGCCTTGCAGCTTTTAGATTGTATGTACAAACTACAGACATAATCCTGAAATTGgccttattaattaaatattatgttcatattttaattgttttatttgtatattgatCAAATGCTGTTACCATATAACTCCTGTGTATATGATGCCCTGTTCTCTGAAAATCGACCCAATGAGAATCCTATTCAGTATTTGgtgtgtaaaacattttacttggc

Function

GO: NA

KEGG:

id description
K22561 COMMD5, HCARG; COMM domain containing 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104481 lncRNA upstream 8197 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 446777 4292126 ~ 4292364 (+) True G83716
TU104432 lncRNA upstream 452541 4280108 ~ 4286600 (+) True G83710
TU104422 lncRNA upstream 473159 4262001 ~ 4265982 (+) True G83704
TU104425 lncRNA upstream 473159 4262001 ~ 4265982 (+) False G83704
TU104492 lncRNA downstream 66470 4818097 ~ 4818329 (+) True G83752
TU104599 lncRNA downstream 1792904 6544531 ~ 6546601 (+) True AMCG00021133
TU104675 lncRNA downstream 1891555 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 1909102 6660729 ~ 6662819 (+) True G83904
TU104690 lncRNA downstream 1927576 6679203 ~ 6681917 (+) True G83914
AMCG00021114 mRNA upstream 505344 4202711 ~ 4233797 (+) True AMCG00021114
AMCG00021113 mRNA upstream 609768 4127070 ~ 4129373 (+) True AMCG00021113
AMCG00021112 mRNA upstream 823497 3906153 ~ 3915644 (+) True AMCG00021112
AMCG00021107 mRNA upstream 894852 3841600 ~ 3844289 (+) True AMCG00021107
AMCG00021108 mRNA upstream 930126 3804211 ~ 3809015 (+) True AMCG00021108
AMCG00021123 mRNA downstream 552 4752179 ~ 4760646 (+) True AMCG00021123
AMCG00021126 mRNA downstream 93124 4844751 ~ 4848172 (+) True AMCG00021126
AMCG00021127 mRNA downstream 139622 4891249 ~ 4894563 (+) True AMCG00021127
AMCG00021128 mRNA downstream 1017540 5769167 ~ 5787583 (+) True AMCG00021128
AMCG00021129 mRNA downstream 1130289 5881916 ~ 5882834 (+) True AMCG00021129
TU104395 other upstream 505385 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 609925 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 940358 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 3812666 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 2363754 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 2363754 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 3880100 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 4664640 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 6211521 10963148 ~ 10987174 (+) True G84657

Expression Profile