RNA id: AMCG00021127


Basic Information

Item Value
RNA id AMCG00021127
length 2003
RNA type mRNA
GC content 0.48
exon number 3
gene id AMCG00021127
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 4891249 ~ 4894563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGTGATGTTCTCTGAGGTACTGGAGAGGATCTGACGATAAGCCCCGCTGTTCACTGCTAGATCGGGCGCTGTGAGATGCAGGCGCATGTGCGCTGTCCGGCTGCAGGTTCAGCGAGGGGGCAGGCGCCAGGAGCTCATTAGCATAATATATTCAACTGTCTGTGGTGCGTGCTCTGACGTCACCCAGGCGGCCGTATATATAGCCCGCCGTCTCAGAAATAGACTCACTCGCTGAGAAGCAGTGCTGGAAGTCGGTCCGCGCAGAGACGCACAGTATACAAATCATACCGAATCGCATCTAGTCCGAAAACCAGACCTTCCTTGTTTTGCAAACCGATCGCAAAAGTGGCGAGAAGCATCATTCAAACGGGTCTGATCCTGAACATGAGCACGGAGATGTTCAAGTCACCCATGGAGGTGGCTGTCTATCAGCTGCACAACTTCTCcatctccttcttctcctcgcTGCTGGGGGGGGATGTGGTCTCTGTAAAGCTGGACAACAGTGCCTCCGGTGCCAGCGTTGTAGCCATTGACAACAAGATCGAGCAGGCAATGGATCTTGTGAAAAACCACCTGATGTATGCGGTGAGGGAGGAAGTGGAGATCCTCAAAGAGCAGATCAAGGAGCTGGCTGAGAAGAACAACCAGCTGGAGAGGGAGAACAGCCTCCTGAAGAACCTGGCAAGCCCAGAGCAGCTGGAGAAGTTCCAGTCACGGCTGCCCTCCGACCTGCCCGCTGCGCTGGAGAACCAGCCGGTGGTGGGGCAGGCGTCTCCGCAGAGTGCCGGCTCTGCTGTGTAAGTGGCTCTGTCTTGGGGCGGGCAGAGCCACTGGTCTTTCGTGAAATTGACCTCCTTTATATTGTCGCACAACTGCCATGAGCTGGTTGTACAGATGAGCCGGAACACAAAACGGACAGAACAGACGTTCCGATGGCAAAACCTGTTTTCTGTGTATCAGACAATCTCTTAAGACAAAAAGCATGACGAGAGAGAGGTTGCATTGGGGACAGGAAGCGGTCCAATGCCGGGGCCTACCCCAtgtctttttcccccccacacgAGGGAGAGGATACGTGACGGGGCTGGCCCAGCGAACGGAGCCAGGGTGTCCGAGAGGCACATCTTCCGCATCACAGAATCACGCCAAGGATAAAAGAAATCTCCAGAAAGAGGACCACCATCACACCACACACAGGAGCCCGTGGATGTATCATTTCTGTAGCAGAGGTTTTGTACATCTCCACACAATGACGTAACTTTTCCCTCCGCAACCATCGTcgcatttcttttttaaacctttattttttgaAGACCACTAAAATCAAGAAGAATAACAACCATTATCTCCTGGACTTGCAGGACCAGGATTCTTGGTTTAAGGACTGATCCAGTCAGCCTTGATTATTGTGTGATCTATTCTAGACGCATCGCTTGTGTACTCTGCAGTCGGGGTAATGCTGCTTTGGGGGAATTACAAAATGAgactttgttttgtgaaaaagaacaaaatttGTCAATAGGAGTGATAACTGCCATATGTTGATTTCTGGGGAAGCAAACTTACAAATTTGCATATCTCTGTAAATTTGTACATAGTGTAAAGTGAAGTATTGAGAATTGTGACATTGCACAAGATGGAGACATGCCACCAGTGTGACGACCAGTGCACTCCCAATGTAAGACTGATCCTTCATTTCCTTTGAACACAAACCAGCTATTGACTTGAAACGCTAAGGTGAAAGACAGGTCTAGACTGTTATCTGACAAACCCACACATTTTctactgaaatgtgttttattaactaCCAAAGACTTGTATAATATTCAGATGAACCAACAAGGACCATGTTTATTTCACTCGGATAAGTCTTGTTAGAAATTGTAATTACAACAAACGGGTTATTGTTGCTTTTGTGTGTCCTTGAGACTGACTGCGGGTATTCACTCTGCTGTATGAATACACGATGCACACTGCAATAAACCTGTGTTTACACAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104492 lncRNA upstream 72920 4818097 ~ 4818329 (+) True G83752
TU104481 lncRNA upstream 160305 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 598885 4292126 ~ 4292364 (+) True G83716
TU104432 lncRNA upstream 604649 4280108 ~ 4286600 (+) True G83710
TU104425 lncRNA upstream 625267 4262001 ~ 4265982 (+) False G83704
TU104599 lncRNA downstream 1649968 6544531 ~ 6546601 (+) True AMCG00021133
TU104675 lncRNA downstream 1748619 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 1766166 6660729 ~ 6662819 (+) True G83904
TU104690 lncRNA downstream 1784640 6679203 ~ 6681917 (+) True G83914
TU104762 lncRNA downstream 2156634 7051197 ~ 7056132 (+) True G83976
AMCG00021126 mRNA upstream 43077 4844751 ~ 4848172 (+) True AMCG00021126
AMCG00021123 mRNA upstream 130603 4752179 ~ 4760646 (+) True AMCG00021123
AMCG00021124 mRNA upstream 139622 4739141 ~ 4751627 (+) True AMCG00021124
AMCG00021114 mRNA upstream 657452 4202711 ~ 4233797 (+) True AMCG00021114
AMCG00021113 mRNA upstream 761876 4127070 ~ 4129373 (+) True AMCG00021113
AMCG00021128 mRNA downstream 874604 5769167 ~ 5787583 (+) True AMCG00021128
AMCG00021129 mRNA downstream 987353 5881916 ~ 5882834 (+) True AMCG00021129
AMCG00021130 mRNA downstream 1071925 5966488 ~ 5970373 (+) True AMCG00021130
AMCG00021132 mRNA downstream 1636417 6530980 ~ 6533315 (+) True AMCG00021132
AMCG00021133 mRNA downstream 1649671 6544234 ~ 6546232 (+) False AMCG00021133
TU104395 other upstream 657493 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 762033 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 1092466 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 3964774 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 2220818 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 2220818 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 3737164 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 4521704 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 6068585 10963148 ~ 10987174 (+) True G84657

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU277414 True 905 lncRNA 0.43 1 NC_048567.1 29287778 ~ 29288682 (+)
tiger barb (Puntius tetrazona) TU277414 True 302 lncRNA 0.43 1 NW_025048306.1 150668 ~ 150969 (-)
mexican tetra (Astyanax mexicanus) TU277414 False 1835 TUCP 0.48 4 NC_035920.1 10849540 ~ 10853238 (+)