RNA id: AMCG00021133



Basic Information


Item Value
RNA id AMCG00021133
length 1041
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00021133
representative False

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6544234 ~ 6546601 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


tcgAGTGACATTTCTCAGATGTCACCAGATTCCGTATTGCACTTAACATAGTCAGTTGTTTAAAAGTCCTGTATGAGGAAAACTGTAGCTACGTTTTACACGGAAACCCCAAAACTCAatttcccacaatgcaatgcaacttcccctttttcattttaacattttatcagttaaataagtatttgatacaattaaatataaatataactatattGCATTCGTTTTATCATTACAgatgtaaaaaatacatgtattattttttaatatatatttttttgcgaTTTCTTCCGGTGTAAGCAGccatcttgatttatttttttctttcaagggTATTTGGTGCAGCGAGAGGGAGGTTGCGGTGAAGATACAACAAGATCCGAACATGTTCCGTTTTGCAAAGACTGCATTGAACCTTAGCGCCCGGGGTGTCCGCCAGGCTGCGGTCCGACAGACCCATCACAAAGCCGGGCCCGACTTCCATGACAAGTATGGCAACATCCTGATGGTGTCCGGGATGCTGTTCTGCGGCGCAGTCTGGTCCTTTGTAGCAACACAGACCGGCATTACATGGAATCTGTCGCCCGTTGGGAAGGTCACCCCCAAAGAATGGAGACAGGAGTGAAGAAACCAAGGCTTTTCACTTTAAAAGTTAACTAAAATAGTTTGAACTGTACTACTTGGTGGATGAACACATACTATCTTCTTGTGCTGTCAGATTGTGCCACTTCTTGTGGCAGAATGTCATAACTGatgtaataaattaagtttaaacCTTGACTAAAAGGCTGCTTTGTATTCTCACAGCTTGACGTGCAGGTTGTTTGCAGTTGTACACATTCATTCCGATGACTTACACGAGTGTGAAACCTCACGTCTCTTTAAACACTGTCAGCTGGTTCCACAGACTAATCTGCCTAAATAACACTGGGGTGTCCAATAATAGTGCTAAATCTGAGTGTGAAATTAGCCCTATAAGTAGCAAGaaattgtgtttattcttgACTTTTGAAAGcaacaaataaactaaatggaTACAGTGTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104492 lncRNA upstream 1725905 4818097 ~ 4818329 (+) True G83752
TU104481 lncRNA upstream 1813290 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 2251870 4292126 ~ 4292364 (+) True G83716
TU104432 lncRNA upstream 2257634 4280108 ~ 4286600 (+) True G83710
TU104425 lncRNA upstream 2278252 4262001 ~ 4265982 (+) False G83704
TU104675 lncRNA downstream 96950 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 114497 6660729 ~ 6662819 (+) True G83904
TU104690 lncRNA downstream 132971 6679203 ~ 6681917 (+) True G83914
TU104762 lncRNA downstream 504965 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 538986 7085218 ~ 7088239 (+) True G83983
AMCG00021132 mRNA upstream 10919 6530980 ~ 6533315 (+) True AMCG00021132
AMCG00021130 mRNA upstream 573861 5966488 ~ 5970373 (+) True AMCG00021130
AMCG00021129 mRNA upstream 661400 5881916 ~ 5882834 (+) True AMCG00021129
AMCG00021128 mRNA upstream 756651 5769167 ~ 5787583 (+) True AMCG00021128
AMCG00021127 mRNA upstream 1649671 4891249 ~ 4894563 (+) True AMCG00021127
AMCG00021131 mRNA downstream 2879 6549111 ~ 6572385 (+) True AMCG00021131
AMCG00021139 mRNA downstream 26944 6573176 ~ 6583201 (+) True AMCG00021139
AMCG00021138 mRNA downstream 39908 6586140 ~ 6615644 (+) True AMCG00021138
AMCG00021137 mRNA downstream 91489 6637721 ~ 6643062 (+) True AMCG00021137
AMCG00021140 mRNA downstream 170726 6716958 ~ 6724763 (+) True AMCG00021140
TU104395 other upstream 2310478 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2415018 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 2745451 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 5617759 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 569149 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 569149 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 2085495 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2870035 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4416916 10963148 ~ 10987174 (+) True G84657

Expression Profile