RNA id: AMCG00021136


Basic Information

Item Value
RNA id AMCG00021136
length 543
RNA type mRNA
GC content 0.56
exon number 2
gene id AMCG00021136
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6449423 ~ 6450172 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCGCAAGCTGGTCTCTGAGAGGAGCTCAGAGCGAGAGGCTGAGGAATTGTAAAGAGTTTGATGTGAAGCAGATCTTGAGGCTGCGCTGGAGGTGGTTCAGTCATTCCTCGCAGAGTTCAGCAGGCAGCGGGAGCTACATCCAGCAGGAGGGATTTGAGCATCGGGGCACGCCAGTTCAGAACAGGTTAAAGAGTCATTCTCGGGACAGGAGTGGGCTCCGCAAGAGCGGCAGCCCAGTGCACAGCATTCTGGCACCAACTCCGGGACCCACACCAGTCTACGCCAGACCTGCTAATCAATCATGGCACCCGCAGAACATCATCGAACACCTGCAGGTGAACGAAGAGCTGCCTAAAATCGGCTCGCCGGAAAACGCCAGGAAAGACGATGCCAAAAACGGGAAAGAGGATGTAAAAACCACGTCGGAGGACCCTTCGGAGGAGGAGGCAAGAGAAAGGTATGGGCAGAGAGGGAATTTGCTGAAGCACAGGGATCGTAACGGGATTCCAGACAGCGGTGCCTCGTTCCCGGCACGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104586 lncRNA downstream 184852 6264336 ~ 6264571 (-) True G83839
TU104580 lncRNA downstream 473642 5975474 ~ 5975781 (-) True G83833
TU104518 lncRNA downstream 1590194 4822058 ~ 4859229 (-) True G83773
TU104504 lncRNA downstream 1698188 4703255 ~ 4751235 (-) True G83761
TU104616 lncRNA upstream 80764 6530936 ~ 6531273 (-) True G83860
TU104619 lncRNA upstream 119007 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA upstream 128682 6578854 ~ 6580419 (-) True G83878
TU104676 lncRNA upstream 193050 6643222 ~ 6643523 (-) True G83901
TU104708 lncRNA upstream 362060 6812232 ~ 6813434 (-) True G83931
AMCG00021134 mRNA downstream 27685 6397628 ~ 6421738 (-) True AMCG00021134
AMCG00021125 mRNA downstream 1712209 4728373 ~ 4737214 (-) True AMCG00021125
AMCG00021122 mRNA downstream 1983765 4463840 ~ 4465658 (-) True AMCG00021122
AMCG00021121 mRNA downstream 1996584 4451684 ~ 4452839 (-) True AMCG00021121
AMCG00021119 mRNA downstream 2075368 4359792 ~ 4374055 (-) True AMCG00021119
AMCG00021135 mRNA upstream 88370 6538542 ~ 6542302 (-) True AMCG00021135
AMCG00021141 mRNA upstream 209365 6659537 ~ 6670212 (-) True AMCG00021141
AMCG00021145 mRNA upstream 365763 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021154 mRNA upstream 602364 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021152 mRNA upstream 629006 7079178 ~ 7079639 (-) True AMCG00021152
TU104502 other downstream 1698188 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 3767661 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 3990044 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 4471455 1973160 ~ 1977968 (-) True G83313
TU104623 other upstream 94320 6544492 ~ 6546577 (-) True G83864
TU105805 other upstream 6076921 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 6269692 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 7177163 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 7419767 13869939 ~ 13917868 (-) True G85037

Expression Profile