RNA id: AMCG00021137


Basic Information

Item Value
RNA id AMCG00021137
length 2279
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00021137
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6637721 ~ 6643062 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCCCCGTGCGCTGAGGGTCCGGGCAGCTGTGCAGGGATGCGCACATCTGGGCTGCGTGCAAACCGGGCTGCTGTCAACTGCCAGCGGTGCCATGCAGACCCTGGTCTCTCCCGTCACCAAAGCCATCTTCATCGGTCTGTTCCTCTTTGCCATCTTACTCATCCTCTATATGAGGAACCTCAAGCAAGAGTCCCCACGGCTGGTAATGATGTCAGAAGAGTGTTTTATTAGACAATGTTCAGGACTGAAATTGATTTGACCGTCAGAAGTGGACGACTAAAATGACATTTGTTCAAGAACTGTGGACTATATTTACGGACTGTGTGGTAAAGGGGCTAAATTAAATGATGTGTATTGCATAAAAGACTGCCAAGACTTCAGGAGGAAAGTCATTACCAAGGACAACTACTGGAGCCTGAATAAGTTATGGGCACTCTGGGTATTTAATGGGCAACTGTAGTTAACTGAGGGGGATAAATTCAGAATATTTACTTCTTGTAGATGTGCCATAATTGATAGTATTGTGATGATTATACTTCAGATAACAGTCTTGGTGCGTGCTGTATGCTGTCTGAAGTTAAATGAGTATTTACTGCACACACTGAATTATGAGACACACAATCCCTTCTAGACACTGGCGTGACGCAGGTTATGAGTTTTGGACTTGTAttcttcttaattatttatagtCCATTGAGAGTGAATTTTCGAGAgaacgaagaagaagaagaaacggCTTTTCACAGatcaaatattaatatgtgCCTGCTTACACTGGTGTTAGGGATATGCTACAGTTATTATAGAAACAACGCTGTTCATGAAAATAATTTCTGTCACAGGGGAGTCCTAATGCACAGCTGGACACTCGAGCTAAATAGAGATGCTCTTATGGGCCCAGTTTCCTCAGTGTGGAAGACTTAAAGGATGTATATTTAACACGATTGATTTTCTCCGACTGCGGTCAGAACAATTAGATGTTCATCCAGTGAAATGTCATGAGGGACTGATAGAACTCACTACCAGTGCTGCTGAAACTACATCGTACAGTCCGTTCCCTTctgattttaattgcaaattCATAAACCCACTACTGCTCTTTGGCTGCGCTTGAATAAACCGCTTCATTAGCGAGGCTGATTAGTATGACTCGTCAGTCACGGGCCCATCATTCCTGACAGTGGCAACGCTAAGTCAAAGAGGGAGACAATTACACAGACCTTGAATTCCCAGACTGATTTACTAATCCATACATATCATATCTGTAAATCGGTTTGGGACTTCGGGGACTGTTTAATGGGCTTTCCCATTGACTTTATTACCAGTGTCAGAAGTGATTGGCCTGTTACTGATGTTGCATACTAAACCTTTTTGGCCCTGAAGAGTTGGCATTGAACGAAGCCAAAACCGCAATAACAggtgttaaataaatgtgtttagtgttgctattttgagtctttttttcattcttttaaatcATATAAAGTGTCAGAGTAAAAATCTATATCATGTAACTTCACTGttgtgtgcagtttgttttcagatttttttctctctccgtCACATTCTCTCCACAAAGGGTATTCCCAATATGTTAATATGACGTGTGAATGCACAAACATTATAGAATGAAAACCAGTAGAGTCTTTAAACATGTATTGGATGCGGGAGTGTTTATGGCACCAATGGTAAACACACAGGGAAATCcagtaatgcattttcttcagattaaatacaaattttgaTTAGATCTGGGTTAAATAGCCGACAATTTAGTGTCATAGATGAATATaacctgtttttcatttttatctgctgaataaaataaaataaaagagataTTGAAGTattgtaaataacaatatagatagataggtagatacAATGTTTACCATCCAGTATTCTGCTCAAGCATCAATACCAGTGTTTTAAATAGGAAACAAATGCCTGCTTATCTGTTGCTTCTATTAATTGGTTAAAATGGTGAACTTGACCTGGGCATTTTGAAAGCTGGCTAATAATGGTCATGAATACAAATTATGGTAACATATGCCAATGGCCAATGTTTCCAAATGGTATACTTCTGCATGAATTCTCCTTTAGGGTTTCATTTTGTCTGTAAATTGGCAACAGAATAAATACCCCTGTGACAAAATCAGTCATATCAGTTTGTGGAGTCTTGACTTGGTTTGACACAGATTgatatttacaaaagaaaaccagCACTTACAGAGGCCTGTCtgacagtatatatttatatatttatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104599 lncRNA upstream 91120 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 1819392 4818097 ~ 4818329 (+) True G83752
TU104481 lncRNA upstream 1906777 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 2345357 4292126 ~ 4292364 (+) True G83716
TU104432 lncRNA upstream 2351121 4280108 ~ 4286600 (+) True G83710
TU104675 lncRNA downstream 120 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 17667 6660729 ~ 6662819 (+) True G83904
TU104690 lncRNA downstream 36141 6679203 ~ 6681917 (+) True G83914
TU104762 lncRNA downstream 408135 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 442156 7085218 ~ 7088239 (+) True G83983
AMCG00021138 mRNA upstream 22077 6586140 ~ 6615644 (+) True AMCG00021138
AMCG00021139 mRNA upstream 54520 6573176 ~ 6583201 (+) True AMCG00021139
AMCG00021131 mRNA upstream 65336 6549111 ~ 6572385 (+) True AMCG00021131
AMCG00021133 mRNA upstream 91489 6544234 ~ 6546232 (+) False AMCG00021133
AMCG00021132 mRNA upstream 104406 6530980 ~ 6533315 (+) True AMCG00021132
AMCG00021140 mRNA downstream 73896 6716958 ~ 6724763 (+) True AMCG00021140
AMCG00021142 mRNA downstream 146073 6789135 ~ 6811229 (+) True AMCG00021142
AMCG00021143 mRNA downstream 250941 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021144 mRNA downstream 272755 6915817 ~ 6924589 (+) True AMCG00021144
AMCG00021146 mRNA downstream 313650 6956712 ~ 6957563 (+) True AMCG00021146
TU104395 other upstream 2403965 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2508505 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 2838938 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 5711246 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 472319 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 472319 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 1988665 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2773205 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4320086 10963148 ~ 10987174 (+) True G84657

Expression Profile