RNA id: AMCG00021138


Basic Information

Item Value
RNA id AMCG00021138
length 3689
RNA type mRNA
GC content 0.55
exon number 16
gene id AMCG00021138
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6586140 ~ 6615644 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTGCTGTGGAGGAGTGGACAGCCCAAGATGTGGCTGACTGGATCAATCACATCGGCTTGCCGGCACATTCTCTGAGCTTCCTAGacaATGCTGTCACAGGATTGGATCTTTTGGAAATCAGCGACTCCATTTTAGCTCCGTGCGAGAAGTTCGCTCAAGTTTTTGCAGTTGGGTTGAGATCGGAGAAGAGCAGGATCCGCTTTATTGGGGAAAActctgtgCCTTCTGCTGAGTGGCTGGGCGTGAGGGACATAGCTGACCGGCTGCACATTCTCGAGCGGCTGCAGGACGTTCTGGAGCGGCAGGAGACGCAGGACTTTCCGCCCCTGCGCCATGAGCTGCTGTCTGTGATCCGAGAGACTTCCGAGTACACCGAGACAGGGAGCATCGAACGTGGCAGAAGCTCTTCCTTCCACGAGGTCCGCGGCCTGCGGGAGATTGACATGAGGGCCGCGGAGGACGcatccagcagcagcagcaacagcagcaacaacgtCTTGCAGCGCCTCCTCCAGGAGCAACTCCGCTATGGCAACCCTGGGGGGGACAGGAACTACTTGGCtctgcagcagcaacagcagcagcagcagcagcagcaagggCCTGTGAGTGGGGTTCCCTACGGCGGAGCTGGAAACCCAGGCGAAGACCATCCCATGGTCCCTCACATCGCCAGGCAGGAGCCGCAGGGCCAGGAGTTGCAGGTTGACTCTGGCATGGAGAAGCAGCTCGTTTCTcgtggaggagggggagggggaggaggaggcggacAGGGACAAGGCCCCAGTGCCGAGGAGCTGCCTACCTATGAGGAAGCCAAGGTCCAGTCACAGTATTTCAGAGGGCAGCAGCAGATGCCGCAAACAGTCGGTGCTGCCTTTTATGTGACTGGGGTGACCAATCAGAAGGTGCGGACGGAGGGGCGGCCCACAGTGCAGCGGGTGAGTGCGGGCAAGGTGCACCAGGACGAAGGCCTGAAGGACCTGAAGCAGGGCCATGTGCGCTCTCTCAGTGAGCGTCTCATGCAGCTGTCCCTGGCCACGAGCGGAGTGAAGGCCCACGCTCCGGTCACCAGtgcccccctctccccacaGCCTCCTGGCCCCCCAGGAGACTTCTACAAACCCAGTGTCCAGCATAGGGGGCCACCCCCAGACTACCCCTTCAAGAACATGGCCAGTCCGCCCAAGCAACAGGAGCCCGGTCACTACTATTCTGACCACCGGCCGGGCCAGCAGGGCAGGGCTGACATGCCTCACGTCAGGTACCAGCCTCCCCCTGACTACGGGGCCCTCAGGCAAAATCAAGAGAACTTGGGGCATCCTCAGAGGATGCACCACCACAGCCCCACGTCCTCCGTGACCTCTGTGGGCTCTGTCTCTCTGGCACAGTCCTCCAACCTGGGCAGCATGATGGGGTCGCCTTACCCTTCCTCTCAGTCCTCTCACCCGGGGGAGACTTTCTCTTTCGTGCCCCGCAGCGCACAAGGGCCCGGCTCGCACCACGGGGACCCCTTCAGCCTGTCCTCCCTGCCTCCTCAGCGTGGTCCACCCTTCCAGGGAGACCCTTATATGTCGTCTCCTCGATCACAGCAGCATTTCCATCACAGCCACTCCTTCCAGGGAGATCCCTACGCCATGGTGTCCCGAGCCCAGCAGATGGTGGAGATGCTGTCGGATGAGAACCGCATGCTGAAGCAGGAGCTGGAGATGTGCTGTGAGAAAGTGGCCAAGCTGCAGAAGCTGGAGACGGAGATACAGCGCGTTTCAGAGGCCTACGAGAACCTGGCCAAGTCCTCCTCCAAGAGAGAATCACTGGAGAAAACCATGAGGAACAAACTGGAGCTGGAGATCCGCAGACTGCACGACTTCAACAGAGACTTGAGGGAGCGCATGGAAACAGCCAATAAGCAGCTGGCTGCTAAAGAATATGAGGGATCAGAAGACAACCGAAAGACCATCTCCCAACTCCTGGCTCAGAACAAGGAGACcatgagggagaaagagaagctGGAGATTGAACTGAACTCTCTCCGCTCCGCTAATGAAGACCAGCGGAGGCATATTGAAATCCGGGACCAGGCTTTGAACAACGCGCAGGCCAAGGTGGTCAAGCTAGAGGAGGAGCTGAAGAAGAAGCAGGTCTATGTGGAGAAAGTGGAGCGCATGCAGCAGGCGCTAGCCCAGCTCCAGGCCGCCTGTGAGAAGAGGGAGCAGCTGGAACACCGCCTCCGAACCCGGCTCGAGAGGGAGCTGGAGTCCCTGCGAACGCAACACCGGCAGGGCAGCTCTCAGAACAGCAACACGCCAGAGTACAACGCCACGGCGCTGATGGAGCACCTGCGCGAGAAGGAGGAGCGGATTCTGGCCCTGGAGGCTGACATGACCAAGTGGGAGCAGAAGTATTTGGAGGAGAGCGTCATGAGGCAGTTTGCTCTAGACGCTGCAGCCTCTGTCGCCACCCAGAGGGACACCTCCTCTGGGATCAGTCACTCTCCCTCCTGCAGTTATGACACCTCAGTCGAAGCCCGGATacagaaggaagaggaggagattCTCATGGCCAACCGCAGATGCCTGGATATGGAAAGCAGGATCAAGAACCTCCACGCACAGATCATTGAGAAGGACGCCATGATTAAGGTGCTTCAGCAGCGGTCACGGAAAGAGCCCAACAAATCAGAGACGTCTTCCACAATGAGGCCATCCAAGTCCCTGATGTCCATCGCCAACACGGGCAGCTCTAGTctgctctctcactccctcGCCCTCAGCAGCAGCCCCATCGCAGAGGAGAAGAAGGATGACCGGAGCTGGAAGGGGAGCTTGGGAGTCCTGCTTGGACCAGAGTTCCGGGCCGAATCCCTGCGGAATGAATCCATCTCCTCCTCGCCCTCTCCCGTCTTGCCCTCCACGCCCATGATGTCAGGGCACTCTAAGAGCGGCAGTCGCGACAGCAGCACCCAGACGGACAAAGGCAACGAAGCCAGCAAGCCCACAACCCCAGCGCTGCCGATGGTGCAGCAGCGATTGACCTGCCCCAGCCCTGTCTATATCCCAGACAGGATAGCAGATATGCCAGTCTTCCACAGCAGCACTTTGGAGAGAAGAGTGCCAGTCCAGTCGCCCACACAGGATGTGGATAATGAAATGGTGGAAATCCTCATTTAAACATGGATGTGTTTATATAGTAgcccttctctctctgcctggcCAAGAAGAactttttacaataaaaaaaaactaatgtatGTACAGTAAATAGACATGGAAAACCTCCAAAACAGGTGAAGGATCGTTGttcagttgtatttgttttgtttaaagagCTAGCTGGCTCAGAATGAGGGTATGTTTAAATGCACTAATTTTaagcattattttcatttaaaaaagacaagcTTGTACAGTTAGTGAGCAATAGATTTTCATTTACACTGATTGGTGAATGCTATTGTATAGTATTGATGTGGGCTTTTTAACAAGCCTGGTGGACCAAATGTGTTTGCTacccttttttttaatctattgcactactttatatatatttttacattttttgtatttctcctaTTTTCTACAAACATTTGTAGCTTTAGTATCAATCTATTTATGAGAAGATCCTATTTCCAGTTATTACACTTGGCACTTGGGCagcaaacattaattttgtagatggggggcag

Function

GO: NA

KEGG:

id description
K16819 AMOT; angiomotin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104599 lncRNA upstream 39539 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 1767811 4818097 ~ 4818329 (+) True G83752
TU104481 lncRNA upstream 1855196 4634736 ~ 4730944 (+) True G83741
TU104445 lncRNA upstream 2293776 4292126 ~ 4292364 (+) True G83716
TU104432 lncRNA upstream 2299540 4280108 ~ 4286600 (+) True G83710
TU104675 lncRNA downstream 27538 6643182 ~ 6643523 (+) True G83900
TU104679 lncRNA downstream 45085 6660729 ~ 6662819 (+) True G83904
TU104690 lncRNA downstream 63559 6679203 ~ 6681917 (+) True G83914
TU104762 lncRNA downstream 435553 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 469574 7085218 ~ 7088239 (+) True G83983
AMCG00021139 mRNA upstream 2939 6573176 ~ 6583201 (+) True AMCG00021139
AMCG00021131 mRNA upstream 13755 6549111 ~ 6572385 (+) True AMCG00021131
AMCG00021133 mRNA upstream 39908 6544234 ~ 6546232 (+) False AMCG00021133
AMCG00021132 mRNA upstream 52825 6530980 ~ 6533315 (+) True AMCG00021132
AMCG00021130 mRNA upstream 615767 5966488 ~ 5970373 (+) True AMCG00021130
AMCG00021137 mRNA downstream 22077 6637721 ~ 6643062 (+) True AMCG00021137
AMCG00021140 mRNA downstream 101314 6716958 ~ 6724763 (+) True AMCG00021140
AMCG00021142 mRNA downstream 173491 6789135 ~ 6811229 (+) True AMCG00021142
AMCG00021143 mRNA downstream 278359 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021144 mRNA downstream 300173 6915817 ~ 6924589 (+) True AMCG00021144
TU104395 other upstream 2352384 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2456924 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 2787357 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 5659665 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 499737 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 499737 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 2016083 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2800623 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4347504 10963148 ~ 10987174 (+) True G84657

Expression Profile