RNA id: AMCG00021141


Basic Information

Item Value
RNA id AMCG00021141
length 3179
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00021141
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6659537 ~ 6670212 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGTCCGCAACTCTTCACACGGCGCCGGGGCTGCGGACGAGCGGACGAGCGGACGAGCGCACAACTTTCCCCGAGCAGCAGCTGCCTTTTCCCGTGCGCTGTGCCAGCCGTCCTGCTCTGCTCCTGCTGCCGACTGTGAGAAGATGTCCGTGAACGAGGTGTACGTGTTCCGGCCCTTCAAGCTGGTCGCCCTGCTGTGCGTGTTGCTGGCGCTGTGCCTGGACGTGGTGGCCCTGCTGAGCCCGGCCTGGGTCACCGCCGAGCGCTACTCGCTGTCCCTGTGGGAGTCGTGCCGGCGCGACGCGGCGCTGTGGCGGTGCATCTCCACCCTCAGGACGGACTGGCAGGTTGCCACGTTGGTTTTGCTGTTGGCGGGGGCAGCGGTCACTCTGGTAGCCTTCCTGATTGCTGTCATTTCCCTGTGCCACGGGACCCAGAGGAAGCACTACCGCACAGTCGCCATCTTCCTCTTCACTGCAGTGGTCCTGCAAGCCTGCGCTCTGGTCCTGTATCCCATCAAGTTCATCGACGGCACAGTCCTGCAGACCTACCACGAGTTCAACTGGGGCTACGGCCTGGGCTGGGGTTCGACCATCTTCATGCTGGGGGGGGGCATCCTGTTCTGTCTGCGGACTGACATGTATGAAGACGCGCTTTACTAGGTCAGCCTCGACTATTATTAGATAGTTAACAGGACTATTATTAAACTGGTCTGCCGAGGCACTTGTGGGAGAGATGAAATATTAGCAGCAGCTGGATGGAGAAGATGGTAttgtcagcttttttttttcttcctcaagcCAAGGATAGAAATGGAGGGCAACTGAGAGGAATAAAACCACGaggacagacagcagcctcttCTAAGGGAACCTCCAACCTGATTTCCATCTTTACAGTTCCCTAGTGATTCTCCACAACAACAACGAAATAAGATAGTTTTGTTGTAAGTTTGGGATTTCTTTAAAAACGTTTTTCTTATTGTTCTTTCCTTTCTGAAACATACTGaactacaaaatgtgtattggAATATCACTTCCCTCAAATCCTCTTATCTAAGATAAAAGAGtggcatttatatttgtattttattttattttctgaactcTACTTTGTGTATACCTTATATGctgaaaaaaagtgtttcattgCCTGATATTGGAAGTGGAAAAGTTGTCTGACTGATGGATCTTAAGTGTGGGGTTGTTAAGGTTTACGTTTTAAAATGGAGTGATAATATGCATATAGGCATTGGTTTTCATTCATAATTAGTTATTCCCTTTTATTAGTAAATGGTCAGTAAATATCACCTTGTTAATAGATGTTCACAGGACCCAAAAGATTATCACTATTACTTGATTTAATCTCCCGTTCATCTATGCATTTCTGTCATTCACCCTAAAGGCTTCAACAGTATCATTTTGAAATCCTTGTTTGATAGTACGGTATTGCATGCATCATTTATTGTCATTCACTGATGTATTCTTTATCTGACACACTTCATCTGTAATTTATtcttaaaacagtatttaactctgacaatattttgtataactGCTACAATATCAAAGCAAGTAACAGTTAAAATATTCCCACTACTAGATTCAGTCTCTTTACTTAACGCTAACATGTAACACTCCCATTGTTGTTAATCTAGAACCTTTACAAAATAGATTTGTATCCTGCcaattgcatttaattcaaatgtagtcatacacaaaataatcatTATGACTGCATTATGTTCGTATTTGATTGATAACCATTTCAGACGTCACTGATGATGATATTCCAAATGTCATTGTAAATAAAGTTGCTGTGCAAGTTTTGGATGTTATCTCCTTACTCCGATACCTATTGTGAAATGTTGTACTGTTTGGTACTGGACAGATTtgatctattttctttttattgtaaatgtcatAAATGAGGTTTATTTTCATGTCAATAGCGCTGCtcggaaataaataaatggcaactTAAACTCTCCTTCTTTCACAGCAAATTCAAAAGTGTTAAATTCCTAGTGTTAGTGGTTTCAGAGTTGAAGTGTTAACATATTGGTGTTGTTTTTGAGGATATAGATACCACCTAGTGTCCATTTAACTGAATTGGAAATGTTAAATTCAAGTGTTTGTCCAACCAGATCCAACCAACACGCAACGGTGcaaaaatgatgatgaaaatgttgttttcactcGTTTTAATATTCGGTTTTCCAGATTATGTTAAAGAATGCTGCCCATATACTGTAAGATTATGCATGAAAAATTGAATTATGTATGTTATACAGTTGCTGCAGAATCCACGTGTTATACTGGTAATGAATGcgaaagaaaacaataacaatttcGATTTATATGCAAAATGTGACTTTGAGTTTTAAAACTCGAGTTTAAAAGTCAAAATTAGGaggtttatttattctttcatatGGCCACAGGGCTCTTCTCCAGGGAAATATGTAGgtatttaaaaagcttttactCTATGTTGTATATAAGTATTTTCTACTGAGCATGTTTGGGGGCagtttacagttacagttacagttttaGCTATGATGATATAACCTGGAAAATGGCGACCCGTTTCTTGACTGATGCAATTTTATTTCCTCTGCCTATTTTTCAATGGAAGAAGGTTGACAAATAATCAAGACTTCTAagattttgtaattaaaatgagagTATTTTTGTGATAACTATTGTAAGCTGTGACTTTAAACGGTAGTTAATGCCTGGAAATATTGTTAAACGCTTTTGATTCGATAGTTGAGATTATATTGAGACGTTTTTTTGTCCACCTAACATGAGGTAAACCCGGAATCCTTAGAGATCGCCATGTAGTTATAATTAAACCTTGAAATTTACTTAAGATACAAATTGGCTACAGGGCTATCCTAATGTACTCTGTTTGTTGTCTAGATTACTGGTAGTTGACTGTCTGTTGTATCCCTTTATGAGTCCACAGATTTGACAATGATTGTGAAAGTGCAATACAGGAATagcaagaaatatattaaactgtCTGAGTCGTCCTACTGTGAGTTCATCTTTGAAGGAATGACACAATATGGATAATATCAACATAAGAATACATAGTGCCTAACCAATATTTCTACTCCTAAGTATGTATTCAtgcaaatatacagtactgtgcaatagttataggcag

Function

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104676 lncRNA downstream 16014 6643222 ~ 6643523 (-) True G83901
TU104619 lncRNA downstream 22630 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA downstream 79118 6578854 ~ 6580419 (-) True G83878
TU104616 lncRNA downstream 128264 6530936 ~ 6531273 (-) True G83860
TU104586 lncRNA downstream 394966 6264336 ~ 6264571 (-) True G83839
TU104708 lncRNA upstream 142020 6812232 ~ 6813434 (-) True G83931
TU104820 lncRNA upstream 447861 7118073 ~ 7122449 (-) False AMCG00021153
TU104821 lncRNA upstream 448631 7118843 ~ 7122449 (-) False AMCG00021153
TU104822 lncRNA upstream 448631 7118843 ~ 7122449 (-) False AMCG00021153
TU104823 lncRNA upstream 448631 7118843 ~ 7122449 (-) False AMCG00021153
AMCG00021135 mRNA downstream 117235 6538542 ~ 6542302 (-) True AMCG00021135
AMCG00021136 mRNA downstream 209365 6449423 ~ 6450172 (-) True AMCG00021136
AMCG00021134 mRNA downstream 237799 6397628 ~ 6421738 (-) True AMCG00021134
AMCG00021125 mRNA downstream 1922323 4728373 ~ 4737214 (-) True AMCG00021125
AMCG00021122 mRNA downstream 2193879 4463840 ~ 4465658 (-) True AMCG00021122
AMCG00021145 mRNA upstream 145723 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021154 mRNA upstream 382324 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021152 mRNA upstream 408966 7079178 ~ 7079639 (-) True AMCG00021152
AMCG00021155 mRNA upstream 417789 7088001 ~ 7101704 (-) True AMCG00021155
AMCG00021153 mRNA upstream 445208 7115420 ~ 7122491 (-) True AMCG00021153
TU104623 other downstream 112960 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 1908302 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 3977775 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 4200158 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 4681569 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 5856881 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 6049652 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 6957123 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 7199727 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 7379762 14049974 ~ 14051897 (-) True G85115

Expression Profile