RNA id: AMCG00021142


Basic Information

Item Value
RNA id AMCG00021142
length 2583
RNA type mRNA
GC content 0.45
exon number 11
gene id AMCG00021142
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6789135 ~ 6811229 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCAAAAGTAAGCTAGGTGTGTGAGAGCTGCAGGACGTAAGGCACTCCTGAAGCAGATTGGGTCGTGTGGTCTGAGCAATGTTCTCCTCCTCAAAGCCATACAAAAACCAGAAGTACGCTGCCTTGAAACAGCAATGCAAAGAGGCCCAAAAGCTGTTTGAAGATCCCGAATTTCCAGCTACAAATGAGTCTTTGTTCTACAAGAAACCCCCTCCAGGAACTGTTCAATGGAAACGTCCAAAGGTTATTCCCGATTGGAAGGAACAGGAGTGGGATCCAAAGCACCCCGAGAACTATTCTGGGATCTTCCACTTCCAGTTCTGGATCTTCGGGGAGTGGATTGACATCGTTGTGGACGACCGTCTACCAACCATCAATGGCAACCTGATCTACTGCCACTCCAAACAACGCAATGAGTTCTGGAGCGCCCTGCTGGAGAAAGCTTATGCAAAGCTGTCTGGTTGCTACGAGTCTCTGGATGGGGGTAACACAGGAGACGCGGTGGTGGATTTCACAGGGGCGGTGAGGGAGTCTATCGATCTGGTGGCAGGGAAGTACAGCTCCGAAATCGCAGAGCAAGTGAAGCTCTTCGAGGACTTGCTGAAAgtgcaggagaggggaggccTCATCAGCTGCTCCATCGAGGCCACCTCCAATTCTGAGATGGAAGCCCGGATGAGCTGTGGACTGGTGAAAGGTCATGCCTACTCAGTGACAGGGGTGCGGAAAGCTAGGCTGGGCCACGGCTTGGTGGCTTTCTTCCGAGCTGAGAAACTCTTCATGATTCGAATGCGGAACCCCTGGGGAAAGACGGAGTGGAACGGCGCCTGGAGTGACGGCTCCAAGGAGTGGGAGAAAGTTGGGAGCAGTGAACGGGATGCAATGGGAATTACAGTGGCAGATGACGGTGAATTCTGGATGGCCTTTGAAGACTGGTGTAAGTTTTTCACTGACGTGGACATCTGCCGCATCATCAACACCTCGCTGTTGAGTGTTCAGAAGACGTGGCACGAGGGAAGGTTCTTGGGGAGCTGGACCAAAAACACAGAGCCCCTTCTCAACCGCTGTGGGGGCTGCATGAACCACAGGCAAACCTTCCTGCAAAACCCCCAGgTGGAGCTTAACAGGAAGTATCGCATGCACAACATAAACATTCAGGAGAATGTCGCAACTTCCCAGTACATCAACTCTCGCGCTGTTTTTATGAGGAAAAAACTTAAGTGCGGCCGTTATGTCATCATACCAACAACATTCACACCTGGAATCCTGTCAGACTTCATGTTAAGGATATTCACTGATGTAGATGCGGAATgcaaAGAACTGGTCTTGGACAAACCAAAGGTGAAGTGCTGGAGTCCGATCTTGGGCTATCCAAGGGCCGTGACTCAGATATACATCCACAGTGCTGAGGGCCTGCAGAAACAGGACCGCTCGGGAGGAGCTGACCCATATGTGATCATATACTGTGAGAAAGCAAAGATCAAATCAACAATCAACAACGACACCCTGGAACCTGTGTTTGACACACAGGCTATCTTTTACAGAAAGTCACCTAGAAAACCCATCACGGTGCAGGTTTGGAACAGCAACGCAATTCAAGACGAATTCCTTGGACAAGTTGTCTTAGCAGCCTCTCCCAAGGACCCCACTCAGTCGCAGAAGTTACAGCTTCGCAAGAAAGGGCGTGAGATGGCCGATGAGATGCCAGGATTTATTAGTCTCAGAGTGCTCACCTCCAACGAATTGATGGACATGTGAGATACAAAGCAGCAGTCCACCATGGTCTTAAAAGTCGTCTCGGTTCAGAAGCTCACCCAGGCACCTTTACTCCAGCTCTGAGATTGTGAAATGAATTAGTATTTTACAAAGCTCAGTGATTTCCAGCAATAAAACCAAGGACCAAGAATTACAACACGAAGTCCTCTGGCTATTTCTCATGAGAGCATTTAGAGATTCAGATACACATTCCCCcctgcacatttatttaatcaaacttGCACTGTTTAGGTCTTATGGACACTTCAAGAATCtttaaatccaaacaaaacCTTTTTCCTCTATCATCTCTACTTGACcttcacaaaatgaaagaagTTTAAATCTTCTAAAATAGTTtaacattctttaaaaagtgGTTGTCAGAGTTAGTAATTGGGAATGACCTTAGAAGGTTGTTTCCTAAATCTAAAcaatttaacttttgtttattGGCGTGCGTTGGTCATTGCAGAAActccatttctgtttgttctaGACAATATTATTAAAGGATACACAGCTTTTCTCTGttcaaaacagattttaattgaCAAAGGTCAAGAATTAAAAGTTTTTCAACATCGcatttgaaatttgaataataatttgaataataacaacatagaGATCAAACCTTAACTCTGTATATTTCCATTTTTAGctattctttatgtatttattttttacttattacttattattctCATTCATCTCTGCATACTTGTGCTCTCCTTTTTCAGTTCAACATATTTTACTCCAGTGTGATCATACTATATtttagatacagtgagggaaaaaagtatttgatcccctgctgattttgtac

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104690 lncRNA upstream 107218 6679203 ~ 6681917 (+) True G83914
TU104679 lncRNA upstream 126316 6660729 ~ 6662819 (+) True G83904
TU104675 lncRNA upstream 145612 6643182 ~ 6643523 (+) True G83900
TU104599 lncRNA upstream 242534 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 1970806 4818097 ~ 4818329 (+) True G83752
TU104762 lncRNA downstream 239968 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 273989 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA downstream 273989 7085218 ~ 7086327 (+) False G83983
TU104815 lncRNA downstream 304152 7115381 ~ 7121237 (+) True AMCG00021150
TU104856 lncRNA downstream 585831 7397060 ~ 7398518 (+) True G84049
AMCG00021140 mRNA upstream 64372 6716958 ~ 6724763 (+) True AMCG00021140
AMCG00021137 mRNA upstream 146073 6637721 ~ 6643062 (+) True AMCG00021137
AMCG00021138 mRNA upstream 173491 6586140 ~ 6615644 (+) True AMCG00021138
AMCG00021139 mRNA upstream 205934 6573176 ~ 6583201 (+) True AMCG00021139
AMCG00021131 mRNA upstream 216750 6549111 ~ 6572385 (+) True AMCG00021131
AMCG00021143 mRNA downstream 82774 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021144 mRNA downstream 104588 6915817 ~ 6924589 (+) True AMCG00021144
AMCG00021146 mRNA downstream 145483 6956712 ~ 6957563 (+) True AMCG00021146
AMCG00021147 mRNA downstream 167811 6979040 ~ 6991988 (+) True AMCG00021147
AMCG00021148 mRNA downstream 215172 7026401 ~ 7040851 (+) True AMCG00021148
TU104395 other upstream 2555379 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2659919 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 2990352 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 5862660 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 304152 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 304152 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 1820498 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2605038 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4151919 10963148 ~ 10987174 (+) True G84657

Expression Profile