RNA id: AMCG00021146


Basic Information

Item Value
RNA id AMCG00021146
length 852
RNA type mRNA
GC content 0.50
exon number 1
gene id AMCG00021146
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 6956712 ~ 6957563 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTCTGGGTTCAGCAGTAGTGTTGATCAACCTTTTGCTTGTGTTCAGTCTCTTGTGCGCTTCTAACTTGAAAAAGCCTTGTATTCGAATCTTAGCCAGTCTTTCCTTCTCCGACTGCCTCCTCGGTTTGGACTCGGTCTTCCTGGGTGCTCTGGAGCTGCTTCCAGGAGGGAGCAGTCAATGGTGGTTCCTCGTGGGAAACTGTGTTTTTGTGACGTCAACTTTGGCCTCCCTGTACAGTATACTGGGAATAGCTGTGGAGAGGTATTTGACTCTGTCCAACCCAAAAAAGGTTAAAACCCGAAGTATGGCTTGGGTGCCCAAAGCCATTATCTCAATGTGGATTTTGGCCGTCACCTTTGGGGCGATGCCTTTGATGGGCTGGAACTGCCTGAACACAGCTGACCGTTGCTGTGCTTCTATGGCCCCCATGGGGATCATTTATCTGCTGGTTGTTGTGGTGCCCAATTTTGTGCTGGCACTGGTGGCGCTTTTGTTCTGTTACCTGAGGACTCTGCGCTGTGTAATGCTGTGGAGAGTGAGAATAATGGCTAAAAACGAAGACGTCGCCTTAGCAGGCATCAAGAACAGGGAAATCAAAGTGGCCAAAACTGTCGCCTGGGTGACTGGATCCTTTGTTGTCTTTTATAGCCCTGCAGTTGCTCTGGCATTTCTTGAACCTTACTGGGATAATGGTGACTGTCTGCCTCCCAGCTTGCTGAAGAACATTGCAGCCACTCTCATCTTGCTGAACTCGTTGGCCAGCCCATTGACCTACGGGCTGAAGCTGAAAGACGTGAGGACTTCTGTTGTGAGAACTTGCAGCTTCATCTGGACCTGCAAACTGTAA

Function

GO:

id name namespace
GO:0048513 animal organ development biological_process
GO:0016477 cell migration biological_process
GO:0009888 tissue development biological_process
GO:0007369 gastrulation biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104690 lncRNA upstream 274795 6679203 ~ 6681917 (+) True G83914
TU104679 lncRNA upstream 293893 6660729 ~ 6662819 (+) True G83904
TU104675 lncRNA upstream 313189 6643182 ~ 6643523 (+) True G83900
TU104599 lncRNA upstream 410111 6544531 ~ 6546601 (+) True AMCG00021133
TU104492 lncRNA upstream 2138383 4818097 ~ 4818329 (+) True G83752
TU104762 lncRNA downstream 93634 7051197 ~ 7056132 (+) True G83976
TU104771 lncRNA downstream 127655 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA downstream 127655 7085218 ~ 7086327 (+) False G83983
TU104815 lncRNA downstream 157818 7115381 ~ 7121237 (+) True AMCG00021150
TU104856 lncRNA downstream 439497 7397060 ~ 7398518 (+) True G84049
AMCG00021144 mRNA upstream 32123 6915817 ~ 6924589 (+) True AMCG00021144
AMCG00021143 mRNA upstream 46298 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021142 mRNA upstream 145483 6789135 ~ 6811229 (+) True AMCG00021142
AMCG00021140 mRNA upstream 231949 6716958 ~ 6724763 (+) True AMCG00021140
AMCG00021137 mRNA upstream 313650 6637721 ~ 6643062 (+) True AMCG00021137
AMCG00021147 mRNA downstream 21477 6979040 ~ 6991988 (+) True AMCG00021147
AMCG00021148 mRNA downstream 68838 7026401 ~ 7040851 (+) True AMCG00021148
AMCG00021150 mRNA downstream 154434 7111997 ~ 7118948 (+) False AMCG00021150
AMCG00021149 mRNA downstream 165011 7122574 ~ 7128057 (+) True AMCG00021149
AMCG00021151 mRNA downstream 171100 7128663 ~ 7146664 (+) True AMCG00021151
TU104395 other upstream 2722956 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2827496 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3157929 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 6030237 918006 ~ 926475 (+) True AMCG00021049
TU104813 other downstream 157818 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other downstream 157818 7115381 ~ 7121237 (+) False AMCG00021150
TU105166 other downstream 1674164 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2458704 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 4005585 10963148 ~ 10987174 (+) True G84657

Expression Profile