RNA id: TU104815


Basic Information

Item Value
RNA id TU104815
length 4623
lncRNA type sense_over
GC content 0.36
exon number 4
gene id AMCG00021150
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7111997 ~ 7121237 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TCTGAGTCCGGGAACTACTTCCGGGTTGGAATTAGCTGGCAAGATGGCAGAGAAGAATGAAGGCAAGTGTCCTTTTGCAAAATAATAgttgtaattaataatacatgtatcattttaaaaccactTAATAGTACACGATTATGTATTGAAAATGCGAGGCTAACAGAAAAGTACGCATGTGTTTTGAATGTTGTTGCCCTTCAAACGCAAACGGAGTTGTCATCAGGGACACTTCAAAGAGCTGCGTTTAGTATCTGAGCCTCGGGGATTATTTTACAATAGGGGTTCATCGAGATTGCTTTAActcaatcaatacatacataaaataaatataaatacatgttgttgTAGACGGATATATAGCTTAGACTGAATGCAGGAAGATGTCGatttaaagtattaataaaataacagattaatCACATGGTTCTGTTGATCTGAGATCGTGGTTGGCGTGTGCTGTTATTACGTTATTTTCTTGCTGAATTAAAATCGTAGTCTTTAACTGTAGCTGCGTCATTCAAAAAATATAGACAACGATAGACaaagttcatatttttaaaagttactgAACAATGAAGCgatctgaattattatttaccATACTGATTGACCAGATGGAGAATCAATCAATGTCGATAATTCAAGGGATTACTGTGATGGCAGTCTGGAGATAAAATGGTCTTGTTTTAATTGACAGGGAGGGCCACTCAAATTCCTCCGTGCATACTCACTTTCTAAGGGCGTTACATTACATTGTTACTGCATACAGTGCTTGTTTGAATGGATGGGAGTATATTTCCATCATACATCTTGGCAATCCACAAATAAGACCCAAGACATTACTGGTATAAACCATTTTACACGATCCTCACAACATggcaaaaaaaggaaaacccttcactttaataatactttttaaatattttattttctctcgtTTGCCATTTTGATTCTGCAGTGAAATTCTTATATAGGCTATACAGTTTCGGTTTCACATTTCCCAGCCCTGCTTTCTGTTTACTTGCAGTGTTTATCATGAAGGTTAAACGTTGCCTTGTATAGACAGTTGCAGACGGATCTTATCTCTCTCACCTGTGCCAGTTACAAATCCATCtgactgaaaatgaaaccaatTGCCATCTGCTAACAGCCTGAGATTAGGGCTATTTTGAGCTCATTTAAATTGACTTCTGCTAGAAAGACAGCGGTCAAGGTCAGACAGTTTCAGCCTTAGCTGCTGATCTCTATTCACCTGTATTTACAGTCTACCCTCTGAATCCAGTTATTGTACTATTTGCAAAAATAGTGGCagatgaaatataaatatttgtcttaaCAGTAGTCTTATCATTCATGTCATCAGGTAGCGACAGCGAACACAGGCTGTTTGTTGAAAGAGTGCTATCTTTCTGATAAGCAAAAGATAAGAGTATAAAGTATTAGCTATAGAGCATTAACATTTGACCTCattctacaaaataaaactttttgtATATAGGCCTAATTCAAAAGTACAAAGGTATTTTTTAAGTCTTACAGGTTGACATTAAATGACACCCTGATGTTATTTGCACAAACCAAATTACacagtatttaagtattttgtaatatatttcaaGAAATAGCAAAATTGTAGTTTTCAGCAAACAAGATATCAAACAATATTCCTGCATCtcacaaattgtattattattagttgtggCTTTTGGACCCTCTGAGTTATGACCGTGTTTGCTCTTGGAATTAAGTAAAACATATCAAGAGGTTGCTGCTCATAAAAAGCTAAGACTAtgtaattgtattgcatttaattcctgtgttatgtaaaatatgaaaccCGGGTTCTGTCGCTAGTAACTTTTCTTTTAGTATGTTAGTATTTCTTTGCTGTTTGCAGGAAAGGGTGAGGAAACTTTTAATGTGATTGACCTGACAGAGTATGCCAAGAAACAGCGGTGGTGGAACAAAATCTTTGGCCGCAACTCTGGACCGATTGCTGAAAAGTATTCTGTTGCCACACAGCTTGCCATAGGAGGAGTAACTGGCTGGTGCGCTGGCTTTCTCTTTAAGAAAGTGGGAAAAGTGGCAGCGTCCGCAGTGGGGGGAGGGTTCTTCCTGCTGCAGATCGCAAACCACACAGGATACATCAAAGTTGACTGGAAGAGAGTGGAGCAAGACGTGAACAAGGCCAAGAAGCAGCTGAAACTGAACGCAGAGAAACCTCCTAAAGAAGTGCGGACTAAAGTTGACGAGGTGACAACATTTGTAAAGAAGAACATTGTACTGACTGGAGGTTTTGCTGGGGGATTTCTGATTGGACTGGCATCCTAGGAAAAGTTTTAACACTTAGCATCACCTTCCATTTGGAgaacccattttttttttttctttttgtttcctctTCTCAGTGTAAAAGCTGCACCGTTTCTGTTGAAGCTGTTGTTTAGGGTTACAACAAcagtcaaaagaaaaaaactacaacatgctgtatatttgtatttgaactgTTGCAGAGTTGATGTAGCCCAATCGCTTTGTGTAcgattttaaattcaaaacaaaccagaTGTGGTACCTTAGGCCATTATATAAATAGAgaaagcattgttttctttaaaccGGTATATTTACTGCactatatgcattttattatatttgttctaTTTGAAATGGAGCTTAAGAAAATGGATGGTTTGTTCAACACCGTACAGCGCACTCATTAGAAGAGAAGTGTGGGAATGTACGGCCAATAAGTGGACATTGCACGCCAGTCCAAAAGATTACcatagaaatgtacattttactaTACACTGCCCAAAGTAGTTGAATGAGGTCATTGTAGAGAAATATTGATCAGTACAAAGGCAGGCATCTAGTCATATCAATGCTACATTATCCCACTCAACATCATTTAACCTTGCTTAGAGAGCTCAATCTGCAGAAGCAACCATACTGAGCCCAGGTGTCTGGCGTTTCTCCCCTCACTAGTTAAGAATTCTCTGCCTCCCCATCTGTGTTTGCAAAATTGTTCAGTGAAAGAAAATGCTGATGTAAGGTCAACAGGGTTAAGCAAGTTTCCTGCTGTTATTGTAGCCCCCATCCAAACAGATGGCTGTCAGTAGCTTTCTATTTGCTCAGCAGATCCCGGGCAGAGGTGGTCTGAGATCGGTGAGGTAGTCCTTaagttaagaaaacaaacatgtttgtcATCCCTTCATCTAAAATACCTGCTATTTTTGATAAggtatttctattttaaagaGGCACTAGTGTTTGTAATTCTGTCATGCTTTCAAAATGCATGAGAAACCCATTCATGCTAAAAGAAGTGGAGTGttcatttccttatttattaattcaaccCATACACACCTGTGGCTGttcaaattcttaaaaaaactgAACTCTGAACATTTAAACTAAGCTTACGCCAAGTTACTTTTCTACCTTTATAAAGCTTCACATTATACACGAATggttggtttcacagaccttgattagcactagcctaccactactctacctaaaataacattgtgaaACCAGCCATAAGAGTTTGAAGGGATAATAAATTAAGCTAAATAGAGGCCTGTGTTGTACAAAGGAAACATTTCGCATGTCTGAGATTTTAGAAATTGACCTTGACctaaaaaagaaagtgaagtattttggtttctttgcaATTGAAAGGAATGGGAATCATTAAAACATGGAATGTGTTTAAGAGTCTGAAtacaaaaattatttattagctgCTGTGACTCTTATGTGTGTTCAGTTTGGAAATATTATCATTTAAGGCCAAGTATCAGCAGAATAATGTAGCTGAAGAAATTCAAGCTGCCCTGATACTTACTGACTAAATCACGACCTGTGCCAAAGTTTATTTAAGgctattatttattaagaaGCTGTTTCTTTTGTATAGCCACTCCTTACAAGTAGCAAGCAGTTCCAATTTAAACACtttataaagtgttacaaatTTGTTgactacacaaaaataaaaatggtttgttttactgttttctgaaaagcaatgttgtgattttctttaaagtaataaagaaacatgttttactaGGGAAAATAAAGCCCAATGctctttttttattagtaatataaaagtaatgtatatattatatatttctacatacattaattattcaaatccCACAACGTGAGCAGGATGTACATCAGACATTACGAACCAAATAAACTGGTTTCCCCTTAGTGAAAGGAATTCCAGCATGAGTAATGAAGTCTAAACATTTGGGAAAGTAAAGTATTATTTAATACCTATGCTACAGTTTGCATATCAACTGCAATCACTTCATCTTTTGAGTATAAACACAATTTcccaaatttaattattttgctgaAAACTAAAATGACTTGTGgtcaataaattaattgaaattatataaacGATCGTGCATACTGAAATTCACATTCAAGTAGTTTTCACTGGTTCTTCTGTAGCATAATGAAGTGAAAACCTGAGTTATATATTGCTTGTGTTCCCTTCTTTCTGTTCTTTTACGAAACCTGAGCAGCAGACAGACTTCTCTGCAGCGTGAATCTCACAGCACCGTCGCATCGCTCTGATTACATCCTTAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104771 lncRNA upstream 27142 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA upstream 29054 7085218 ~ 7086327 (+) False G83983
TU104762 lncRNA upstream 59249 7051197 ~ 7056132 (+) True G83976
TU104690 lncRNA upstream 433464 6679203 ~ 6681917 (+) True G83914
TU104679 lncRNA upstream 452562 6660729 ~ 6662819 (+) True G83904
TU104856 lncRNA downstream 275823 7397060 ~ 7398518 (+) True G84049
TU104868 lncRNA downstream 304694 7425931 ~ 7426347 (+) True G84061
TU104888 lncRNA downstream 390132 7511369 ~ 7511988 (+) True G84078
TU104903 lncRNA downstream 432383 7553620 ~ 7560120 (+) True G84090
TU104910 lncRNA downstream 535956 7657193 ~ 7700683 (+) True G84095
AMCG00021148 mRNA upstream 74530 7026401 ~ 7040851 (+) True AMCG00021148
AMCG00021147 mRNA upstream 123393 6979040 ~ 6991988 (+) True AMCG00021147
AMCG00021146 mRNA upstream 157818 6956712 ~ 6957563 (+) True AMCG00021146
AMCG00021144 mRNA upstream 190792 6915817 ~ 6924589 (+) True AMCG00021144
AMCG00021143 mRNA upstream 204967 6894003 ~ 6910414 (+) True AMCG00021143
AMCG00021149 mRNA downstream 1337 7122574 ~ 7128057 (+) True AMCG00021149
AMCG00021151 mRNA downstream 7426 7128663 ~ 7146664 (+) True AMCG00021151
AMCG00021158 mRNA downstream 239123 7360360 ~ 7390841 (+) True AMCG00021158
AMCG00021160 mRNA downstream 282915 7404152 ~ 7420194 (+) True AMCG00021160
AMCG00021163 mRNA downstream 303426 7424663 ~ 7430404 (+) True AMCG00021163
TU104395 other upstream 2881625 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 2986165 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3316598 3797841 ~ 3798783 (+) True G83624
TU103781 other upstream 6188906 918006 ~ 926475 (+) True AMCG00021049
TU105166 other downstream 1510490 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 2295030 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3841911 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4954108 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8942363 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile