RNA id: AMCG00021153


Basic Information

Item Value
RNA id AMCG00021153
length 4781
RNA type mRNA
GC content 0.36
exon number 6
gene id AMCG00021153
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7115420 ~ 7122491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCGAGTTAAGATTTCCACTCGGAATGGATTCCAGTGCGCACAGCTCCGTGTCTCTGCGCACACAAGATATTGCAGCGTTTCTGGCAAGATCTCTGAATATTGATCCTGAAATGTCCCGGAAAGATCCCTGCCAGAAACAAGCATGTGAAATTCAGAAATGCCTGCAAGCAAACAAGTACATTGAGAGCAGATGTAAGGATGTAATCAGAGCGATGCGACGGTGCTGTGAGATTCACGCTGCAGAGAAGTCTGTCTGCTGCTCAGGTTTCGTAAAAGAACAGAAAGAAGGGAACACAAGCAATATATAACTCAGGTTTTCACTTCATTATGCTACAGAAGAACCAGTGAAAACTACTTGAATGTGAATTTCAGTATGCACGATCgtttatataatttcaattaatttattgacCACAAGTCATTTTAGTTTtcagcaaaataattaaatttgggAAATTGTGTTTATACTCAAAAGATGAAGTGATTGCAGTTGATATGCAAACTGTAGCATAGGTATTAAATAATACTTTACTTTCCCAAATGTTTAGACTTCATTACTCATGCTGGAATTCCTTTCACTAAGGGGAAACCAGTTTATTTGGTTCGTAATGTCTGATGTACATCCTGCTCACGTTGTGggatttgaataattaatgtatgtagaaatatataatatatacattacttttatattactaataaaaaaagagCATTGGGCTTTATTTTCCCtagtaaaacatgtttctttattactttaaagaaaatcacaacattgcttttcagaaaacagtaaaacaaaccatttttatttttgtgtagtcAACAAatttgtaacactttataaaGTGTTTAAATTGGAACTGCTTGCTACTTGTAAGGAGTGGCTATACAAAAGAAACAGCttcttaataaataatagcCTTAAATAAACTTTGGCACAGGTCGTGATTTAGTCAGTAAGTATCAGGGCAGCTTGAATTTCTTCAGCTACATTATTCTGCTGATACTTGGCCTTAAATGATAATATTTCCAAACTGAACACACATAAGAGTCACAGcagctaataaataatttttgtaTTCAGACTCTTAAACACATTCCATGTTTTAATGATTCCCATTCCTTTCAATtgcaaagaaaccaaaatacttcactttcttttttagGTCAAGGTCAATTTCTAAAATCTCAGACATGCGAAATGTTTCCTTTGTACAACACAGGCCTCTATTTAGCTTAATTTATTATCCCTTCAAACTCTTATGGCTGGTttcacaatgttattttaggtagagtagtggtaggctagtgctaatcaaggtctgtgaaaccaaccATTCGTGTATAATGTGAAGCTTTATAAAGGTAGAAAAGTAACTTGGCGTAAGCTTAGTTTAAATGTTCAGAGTTcagtttttttaagaatttgaaCAGCCACAGGTGTGTATGggttgaattaataaataaggaaatgaaCACTCCACTTCTTTTAGCATGAATGGGTTTCTCATGCATTTTGAAAGCATGACAGAATTACAAACACTAGTGCCtctttaaaatagaaataccTTATCAAAAATAGCAGGTATTTTAGATGAAGGGATgacaaacatgtttgttttcttaacttAAGGACTACCTCACCGATCTCAGACCACCTCTGCCCGGGATCTGCTGAGCAAATAGAAAGCTACTGACAGCCATCTGTTTGGATGGGGGCTACAATAACAGCAGGAAACTTGCTTAACCCTGTTGACCTTACATCAGCATTTTCTTTCACTGAACAATTTTGCAAACACAGATGGGGAGGCAGAGAATTCTTAACTAGTGAGGGGAGAAACGCCAGACACCTGGGCTCAGTATGGTTGCTTCTGCAGATTGAGCTCTCTAAGCAAGGTTAAATGATGTTGAGTGGGATAATGTAGCATTGATATGACTAGATGCCTGCCTTTGTACTGATCAATATTTCTCTACAATGACCTCATTCAACTACTTTGGGCAGTGTAtagtaaaatgtacatttctatgGTAATCTTTTGGACTGGCGTGCAATGTCCACTTATTGGCCGTACATTCCCACACTTCTCTTCTAATGAGTGCGCTGTACGGTGTTGAACAAACCATCCATTTTCTTAAGCTCCATTTCAAAtagaacaaatataataaaatgcatatagtGCAGTAAATATACCggtttaaagaaaacaatgctttcTCTATTTATATAATGGCCTAAGGTACCACAtctggtttgttttgaatttaaaatcgTACACAAAGCGATTGGGCTACATCAACTCTGCAAcagttcaaatacaaatatacagcatgttgtagtttttttcttttgactgTTGTTGTAACCCTAAACAACAGCTTCAACAGAAACGGTGCAGCTTTTACACTGAGAagaggaaacaaaaagaaaaaaaaaaaatgggttcTCCAAATGGAAGGTGATGCTAAGTGTTAAAACTTTTCCTAGGATGCCAGTCCAATCAGAAATCCCCCAGCAAAACCTCCAGTCAGTACAATGTTCTTCTTTACAAATGTTCTCACCTCGTCAACTTTAGTCCGCACTTCTTTAGGAGGTTTCTCTGCGTTCAGTTTCAGCTGCTTCTTGGCCTTGTTCACGTCTTGCTCCACTCTCTTCCAGTCAACTTTGATGTATCCTGTGTGGTTTGCGATCTGAAAGCAGGAAGAACCCTCCCCCCACTGCGGACGCTGCCACTTTTCCCACTTTCTTAAAGAGAAAGCCAGCGCACCAGCCAGTTACTCCTCCTATGGCAAGCTGTGTGGCAACAGAATACTTTTCAGCAATCGGTCCAGAGTTGCGGCCAAAGATTTTGTTCCACCACCGCTGTTTCTTGGCATACTCTGTCAGGTCAATCACATTAAAAGTTTCCTCACCCTTTCCTGCAAACAGCAAAGAAATACTAACATACTAAAAGAAAAGTTACTAGCGACAGAACCCGggtttcatattttacataacacaggaattaaatgcaatacaattacaTAGTCTTAGCTTTTTATGAGCAGCAACCTCTTGATATGTTTTACTTAATTCCAAGAGCAAACACGGTCATAACTCAGAGGGTCCAAAAGccacaactaataataatacaatttgtgaGATGCAGGAATATTGTTTGATATCTTGTTTGCTGAAAACTACAATTTTGCTATTTCttgaaatatattacaaaatacttaaatactgtGTAATTTGGTTTGTGCAAATAACATCAGGGTGTCATTTAATGTCAACCTGTAAGACTTAAAAAATACCTTTGTACTTTTGAATTAGGCCTATATacaaaaagttttattttgtagaatGAGGTCAAATGTTAATGCTCTATAGCTAATACTTTATACTCTTATCTTTTGCTTATCAGAAAGATAGCACTCTTTCAACAAACAGCCTGTGTTCGCTGTCGCTACCTGATGACATGAATGATAAGACTACTGttaagacaaatatttatatttcatctGCCACTATTTTTGCAAATAGTACAATAACTGGATTCAGAGGGTAGACTGTAAATACAGGTGAATAGAGATCAGCAGCTAAGGCTGAAACTGTCTGACCTTGACCGCTGTCTTTCTAGCAGAAGTCAATTTAAATGAGCTCAAAATAGCCCTAATCTCAGGCTGTTAGCAGATGGCAattggtttcattttcagtcaGATGGATTTGTAACTGGCACAGGTGAGAGAGATAAGATCCGTCTGCAACTGTCTATACAAGGCAACGTTTAACCTTCATGATAAACACTGCAAGTAAACAGAAAGCAGGGCTGGGAAATGTGAAACCGAAACTGTATAGCCTATATAAGAATTTCACTGCAGAATCAAAATGGCAAacgagagaaaataaaatatttaaaaagtattattaaagtgaagggttttcctttttttgccATGTTGTGAGGATCGTGTAAAATGGTTTATACCAGTAATGTCTTGGGTCTTATTTGTGGATTGCCAAGATGTATGATGGAAATATACTCCCATCCATTCAAACAAGCACTGTATGCAGTAACAATGTAATGTAACGCCCTTAGAAAGTGAGTATGCACGGAGGAATTTGAGTGGCCCTCCCTGTCAATTAAAACAAGACCATTTTATCTCCAGACTGCCATCACAGTAATCCCTTGAATTATCGACATTGATTGATTCTCCATCTGGTCAATCAGTATggtaaataataattcagatcGCTTCATTGTTcagtaacttttaaaaatatgaactttGTCTATCGTTGTCTATATTTTTTGAATGACGCAGCTACAGTTAAAGACTACGATTTTAATTCAGCAAGAAAATAACGTAATAACAGCACACGCCAACCACGATCTCAGATCAACAGAACCATGTGattaatctgttattttattaatactttaaatCGACATCTTCCTGCATTCAGTCTAAGCTATATATCCGTCTAcaacaacatgtatttatatttattttatgtatgtattgattgagTTAAAGCAATCTCGATGAACCCCTATTGTAAAATAATCCCCGAGGCTCAGATACTAAACGCAGCTCTTTGAAGTGTCCCTGATGACAACTCCGTTTGCGTTTGAAGGGCAACAACATTCAAAACACATGCGTACTTTTCTGTTAGCCTCGCATTTTCAATACATAATCGTGTACTATTAagtggttttaaaatgatacatgtattattaattacaacTATTATTTTGCAAAAGGACACTTGCCTTCATTCTTCTCTGCCATCTTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104708 lncRNA downstream 301986 6812232 ~ 6813434 (-) True G83931
TU104676 lncRNA downstream 471897 6643222 ~ 6643523 (-) True G83901
TU104619 lncRNA downstream 478513 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA downstream 535001 6578854 ~ 6580419 (-) True G83878
TU104616 lncRNA downstream 584147 6530936 ~ 6531273 (-) True G83860
TU104859 lncRNA upstream 268131 7390622 ~ 7390915 (-) True G84052
TU104860 lncRNA upstream 268573 7391064 ~ 7392433 (-) True G84053
TU104891 lncRNA upstream 340237 7462728 ~ 7469428 (-) True G84081
TU104901 lncRNA upstream 389070 7511561 ~ 7511989 (-) True G84089
TU104906 lncRNA upstream 431129 7553620 ~ 7560120 (-) False G84093
AMCG00021155 mRNA downstream 13716 7088001 ~ 7101704 (-) True AMCG00021155
AMCG00021152 mRNA downstream 35781 7079178 ~ 7079639 (-) True AMCG00021152
AMCG00021154 mRNA downstream 52164 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021145 mRNA downstream 270898 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021141 mRNA downstream 445208 6659537 ~ 6670212 (-) True AMCG00021141
AMCG00021156 mRNA upstream 82930 7205421 ~ 7222849 (-) True AMCG00021156
AMCG00021157 mRNA upstream 100975 7223466 ~ 7325452 (-) True AMCG00021157
AMCG00021161 mRNA upstream 317541 7440032 ~ 7441027 (-) True AMCG00021161
AMCG00021162 mRNA upstream 347266 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021166 mRNA upstream 360082 7482573 ~ 7491914 (-) True AMCG00021166
TU104623 other downstream 568843 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 2364185 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 4433658 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 4656041 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 5137452 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 5404602 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 5597373 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 6504844 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 6747448 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6927483 14049974 ~ 14051897 (-) True G85115

Expression Profile