RNA id: TU104820


Basic Information

Item Value
RNA id TU104820
length 2915
lncRNA type sense_over
GC content 0.36
exon number 5
gene id AMCG00021153
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7115420 ~ 7122491 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCTCCGTGTCTCTGCGCACACAAGATATTGCAGCGTTTCTGGCAAGATCTCTGAATATTcagacacacttACCCAGAGCACCTTACAGTTGTTACactcagaaagaaaacaagGATCCTGAAATGTCCCGGAAAGATCCCTGCCAGAAACAAGCATGTGAAATTCAGAAATGCCTGCAAGCAAACAAGTACATTGAGAGCAGATGTAAGGATGTAATCAGAGCGATGCGACGGTGCTGTGAGATTCACGCTGCAGAGAAGTCTGTCTGCTGCTCAGGTTTCGTAAAAGAACAGAAAGAAGGGAACACAAGCAATATATAACTCAGGTTTTCACTTCATTATGCTACAGAAGAACCAGTGAAAACTACTTGAATGTGAATTTCAGTATGCACGATCgtttatataatttcaattaatttattgacCACAAGTCATTTTAGTTTtcagcaaaataattaaatttgggAAATTGTGTTTATACTCAAAAGATGAAGTGATTGCAGTTGATATGCAAACTGTAGCATAGGTATTAAATAATACTTTACTTTCCCAAATGTTTAGACTTCATTACTCATGCTGGAATTCCTTTCACTAAGGGGAAACCAGTTTATTTGGTTCGTAATGTCTGATGTACATCCTGCTCACGTTGTGggatttgaataattaatgtatgtagaaatatataatatatacattacttttatattactaataaaaaaagagCATTGGGCTTTATTTTCCCtagtaaaacatgtttctttattactttaaagaaaatcacaacattgcttttcagaaaacagtaaaacaaaccatttttatttttgtgtagtcAACAAatttgtaacactttataaaGTGTTTAAATTGGAACTGCTTGCTACTTGTAAGGAGTGGCTATACAAAAGAAACAGCttcttaataaataatagcCTTAAATAAACTTTGGCACAGGTCGTGATTTAGTCAGTAAGTATCAGGGCAGCTTGAATTTCTTCAGCTACATTATTCTGCTGATACTTGGCCTTAAATGATAATATTTCCAAACTGAACACACATAAGAGTCACAGcagctaataaataatttttgtaTTCAGACTCTTAAACACATTCCATGTTTTAATGATTCCCATTCCTTTCAATtgcaaagaaaccaaaatacttcactttcttttttagGTCAAGGTCAATTTCTAAAATCTCAGACATGCGAAATGTTTCCTTTGTACAACACAGGCCTCTATTTAGCTTAATTTATTATCCCTTCAAACTCTTATGGCTGGTttcacaatgttattttaggtagagtagtggtaggctagtgctaatcaaggtctgtgaaaccaaccATTCGTGTATAATGTGAAGCTTTATAAAGGTAGAAAAGTAACTTGGCGTAAGCTTAGTTTAAATGTTCAGAGTTcagtttttttaagaatttgaaCAGCCACAGGTGTGTATGggttgaattaataaataaggaaatgaaCACTCCACTTCTTTTAGCATGAATGGGTTTCTCATGCATTTTGAAAGCATGACAGAATTACAAACACTAGTGCCtctttaaaatagaaataccTTATCAAAAATAGCAGGTATTTTAGATGAAGGGATgacaaacatgtttgttttcttaacttAAGGACTACCTCACCGATCTCAGACCACCTCTGCCCGGGATCTGCTGAGCAAATAGAAAGCTACTGACAGCCATCTGTTTGGATGGGGGCTACAATAACAGCAGGAAACTTGCTTAACCCTGTTGACCTTACATCAGCATTTTCTTTCACTGAACAATTTTGCAAACACAGATGGGGAGGCAGAGAATTCTTAACTAGTGAGGGGAGAAACGCCAGACACCTGGGCTCAGTATGGTTGCTTCTGCAGATTGAGCTCTCTAAGCAAGGTTAAATGATGTTGAGTGGGATAATGTAGCATTGATATGACTAGATGCCTGCCTTTGTACTGATCAATATTTCTCTACAATGACCTCATTCAACTACTTTGGGCAGTGTAtagtaaaatgtacatttctatgGTAATCTTTTGGACTGGCGTGCAATGTCCACTTATTGGCCGTACATTCCCACACTTCTCTTCTAATGAGTGCGCTGTACGGTGTTGAACAAACCATCCATTTTCTTAAGCTCCATTTCAAAtagaacaaatataataaaatgcatatagtGCAGTAAATATACCggtttaaagaaaacaatgctttcTCTATTTATATAATGGCCTAAGGTACCACAtctggtttgttttgaatttaaaatcgTACACAAAGCGATTGGGCTACATCAACTCTGCAAcagttcaaatacaaatatacagcatgttgtagtttttttcttttgactgTTGTTGTAACCCTAAACAACAGCTTCAACAGAAACGGTGCAGCTTTTACACTGAGAagaggaaacaaaaagaaaaaaaaaaaatgggttcTCCAAATGGAAGGTGATGCTAAGTGTTAAAACTTTTCCTAGGATGCCAGTCCAATCAGAAATCCCCCAGCAAAACCTCCAGTCAGTACAATGTTCTTCTTTACAAATGTTGTCACTCGTCAACTTTAGTCCGCACTTCTTTAGGAGGTTTCTCTGCGTTCAGTTTCAGCTGCTTCTTGGCCTTGTTCACGTCTTGCTCCACTCTCTTCCAGTCAACTTTGATGTATCCTGTGTGGTTTGCGATCTGAAAGGTAGATATTTTTAATCTACTAGTCTATTAACAATTATAAACTTGTCATTATTTTCTAGCCCTTTACACAGTATATGAATGTCCAGATCCATAGTATACATTCTAATGAATAACCCGAATCCGTGAAGAGCTTGAGtaattgaaaagtatttttttttttggcctacCAAACCTTCTTAAAAATCATGACATACAGTACACCAAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104708 lncRNA downstream 304639 6812232 ~ 6813434 (-) True G83931
TU104676 lncRNA downstream 474550 6643222 ~ 6643523 (-) True G83901
TU104619 lncRNA downstream 481166 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA downstream 537654 6578854 ~ 6580419 (-) True G83878
TU104616 lncRNA downstream 586800 6530936 ~ 6531273 (-) True G83860
TU104859 lncRNA upstream 268173 7390622 ~ 7390915 (-) True G84052
TU104860 lncRNA upstream 268615 7391064 ~ 7392433 (-) True G84053
TU104891 lncRNA upstream 340279 7462728 ~ 7469428 (-) True G84081
TU104901 lncRNA upstream 389112 7511561 ~ 7511989 (-) True G84089
TU104906 lncRNA upstream 431171 7553620 ~ 7560120 (-) False G84093
AMCG00021155 mRNA downstream 16369 7088001 ~ 7101704 (-) True AMCG00021155
AMCG00021152 mRNA downstream 38434 7079178 ~ 7079639 (-) True AMCG00021152
AMCG00021154 mRNA downstream 54817 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021145 mRNA downstream 273551 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021141 mRNA downstream 447861 6659537 ~ 6670212 (-) True AMCG00021141
AMCG00021156 mRNA upstream 82972 7205421 ~ 7222849 (-) True AMCG00021156
AMCG00021157 mRNA upstream 101017 7223466 ~ 7325452 (-) True AMCG00021157
AMCG00021161 mRNA upstream 317583 7440032 ~ 7441027 (-) True AMCG00021161
AMCG00021162 mRNA upstream 347308 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021166 mRNA upstream 360124 7482573 ~ 7491914 (-) True AMCG00021166
TU104623 other downstream 571496 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 2366838 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 4436311 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 4658694 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 5140105 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 5404644 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 5597415 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 6504886 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 6747490 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6927525 14049974 ~ 14051897 (-) True G85115

Expression Profile