RNA id: AMCG00021155


Basic Information

Item Value
RNA id AMCG00021155
length 5054
RNA type mRNA
GC content 0.45
exon number 23
gene id AMCG00021155
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7088001 ~ 7101704 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tctctctctctctctctctttgtgacCCACTCTCCCAGTAATTGGACCTCAAGGTTTACTTCTTGCATAACCTTTGCTGAGCTCTTAAATACCTTTCCTGACTGGGAAAGTCCTGAGTGATTGCAAAGTTGCCGACTTGTGGGGAAACAATGAAGATGGAGTTGTTGTCTTTTGTTGTGCTTTGCTGTGTTGTTGAGGAGTCCTGGGCCATTACTAGAGAATATAACATTGCTGCAGTGGAGCTGGAGTGGGATTACCTGCACAGTGATCGACTGGATTCCCCCCCTCCACAGAGCAGgCACCAGAAATCACTCAGTCCTTCCAAGGATGGGCCACAGAAGTACATGAAGGCTACATATTGGGAATATACAGATTCCACATTCTCAACACCAATATCCAAGCCACCGTGGATGGGAATTCAAGGGCCAACCATAAAAGCTGAAATCAATGATGTAATAGTGGTTCACTTCAAGAATTTTGCATCACGCCCTTTCAGTGTGCACCCTATTGGAATCTCCTACTGGAAACAATCAGAAGGAGCCGGTTATAGTGACGAGACGTGTAAGCAGGAGAAAGGGGACGATTCTGTGTCTCCAGGGGCGTATTATCGCTATGTCTGGGAGATCATGCCTTCAAATGGACCAACCCTTGGGGATCCAGATTGTCTCATTTATTCCTATTCCTCCCAAGTCGACACTGTAAGGGACTTCAACTCTGGTCTAATTGGGGCTTTGTTTATATGCAAAGCAGgtCTGAAATTATGCCTGCAAAAGCCAGCCGTTTGGCATTTAATTGGAATGGGCACCAGCCCCCAGATTCACTCCATTCATTTCCAGGATCACACCTTGCAAGTGGAGAAACACAGGAAAATGGCCTTGGATATGACGCCCATGACTTTCACCACAGCAGAAATGAAACCAGTGGCCATTGGGAAATTTCTCATATCCTGCCAGATACACTCTCACCTGCAAGCTGGCATGAATGCGTACTTCACTGTGGAGAGCTGTCCCGAGGagctgaagaagagaaaagtcACCCAGGACCCCGATTACAGTGACGACTACACTCTGGAGGACATGCTGTCTAATGTGGTTGTGATGAATCCTGAGCTGAACGTACGATCTGCGAAACCCAAGCCCAGGAGATGGGTGCATTACATTGCAGCTCAGGAGGTCATGTGGGATTACATCCCAAATTTCCCCGGTGAAAGAGAGAGGGTTTTGTCCACTGAGTTTTTAGAGAAAGGTCCTCTGCGGATAGGAAAGCAGTACAAAAAAGCTATTTACAAGGAGTATGAGGACAAGACTTTTACTAAACAAAAGCCCACACAAGACAAAGGACTTGTAGGACCTGTCTTAAGAGGAGAAGTCGAAGATGAATTTGAGATTGTATTCAAGAATCTGGCAAGTCGCCCTTTCAACATCTACCCTAATGGCCTCAGCCGTGTTCAATCACTTGTAGGCAAAGTGTTGCTGAAGGGGAAGGATTTGAAGAGCTATGCTGTACAGCCCAATGAAACCTTCACCTACTTATGGACCATTACTGCAGAGGACGGTCCAACCAAAGCAGACCCTCGATGTTTAACCCGGCTCTACAAAAGCACCATCGACCCTGTCAGGGACATTGCTTCAGGGCTCATGGGCCCACTTGTCATATGCTACAGAAAAACCCTTGACAAGCGTGGCAATGTGGTCACATCTGATCGAGAGAGGCACttgatgttttccatttttgatGAAAACAAGAGTTGGTACATCAATGAAAACAtccagaaatatattaaagcgCCCTCCAGTATTGATCCCACAGATGCTGACTTCTACAAATCTAACCTGATGTACActgtGAATGGATACATGTACAACAACCTTCGCTTCAAAGATTGTTTAGGAAATGTGGCTTTCTGGCATGTTGTGAACGTTGGAACCCAGAGTGACTTTCTTTCAGTTTACTTCACTGGAAACACTTTTGAAAGAGATAAGGtttatgaaactgttttaaCTCTTTTCCCCATGGCTGGGGAAACTGTCAGCATGGAACTGGAGACATTAGGTGAATGGGAAATTGGCTCTCTAGACTCCAATTATAAAAATCGAGGTATGAGTGCAAAATACTCAGTCCATAAATGTGAGAGTGACGATTCTGCCACGGATGGGGACATTTTTTATGAAGACTATAACTATGACAATATTTTTGCCCCTAGAGGGACTGGGAAAAACAACAGGACAATGGCCATTAGggtctgcaaaaaaaaagtgattgatAATTCATTGTCCGCGAGGGATAACGCAACAGCAAGCAGTAAACCAGACTGTTATATTGTGACTGttagagacagacagggagagagaactGAAGCGTTTTCCCCTGGAGATATTCCCCTGGATATCCTCCAAGAAATAGAAGACTCCAATACAACCATGGGAGAAAGTCAAGAGAAGCATTCAACTAAACGCAAAGAGAGGTCTCTTGCAGCAGATGAAGACCTCACCTTGTTGTTAACACCTGCCCCCTTTCAAATCCCTGAGACAGACACAAGAGATGGTGGAAGCCCACTTCTGGAAGATGATGAATCTGAGGAGGAACAAAAGGAGCTACTAGCCAATCCTGTGATTTTGATCAATGACACTAATGTAACATTGTCATCTCTTAGGAAAGCACAAGGTACCACACATTCAGCACAACAGGTCATTTTAAAGCTAGTGGACAgagtgagaaaaataaagagagatgAAGGTTCACTTCAGCAGTCAGAAGGAAAGAATAATGAGTCTCTTAATCCGGACACCAGTCAAAATACAGTGTTAGCCACAGAAGTgagtaaaaacacaaaccagaaaGGAAAGGTTGTAAAAGCAGCTCTGGATCCTAAGCTGTATGAGtggttaaacaaaaatatgctGCTGAAACGAGAAACCAGAGGGGAGAGTAAACCTGAGGACAAGAAACCTCCTGACCAGCAACACGACAAGAATGTGTTGAAATTTGACTACTCCCTCTCACAGGAAAATGTCAGCCAGGCAGGTAAGATGCAAGAAAACCCAGATGGCATTGTTCCCAATTTCCAGGATACTGGAAACATATCAGAGGGGCTGAATGCTAATGTCAACCTGTCAGAAAGTGCAAATGTCTCCAGCGGAGAACCCATGTTAGACTACGACGACTATAACCAAGAGGAGATCAATGGAACGAGTCATGATGTGTACAACAACGAAGGATTAGGTCTTCGCTCTTTGAGTGGAAAACCCCGCAATTTCTACATTGCTGCCATTGAGATGTTGTGGGATTATGGTGTCAAGAAACCACAACAACTCATTAAACCCAGAGAGATGAGAAGAGGATATCAAAAGTTTTTCACATTGTACAAAAAAGTGGTGTTCAGGGAGTATCTGGACAGCAGCTTCACCCAGCAGGTTGTGCGTGGAGAAATGGAGGAACACCTTGGGATTCTTGGACCTGTGATCAGAGCTGAGGTCAATGATGTCATAACTGTCACATTTAAGAATCTTGCTACCAGACCCTATGCGTTTCACTTCCATGGTGTGTATGACAGAACGGCGCAGGGCCAGTCCAACACACTTGGGGAAGAATATGAAAAGGCTGTAAAGCCCAATGAGGTTCGCACGTACAGCTGGAAAGTCACCAAGAGACAGGGCCCTTCCGACAGTGAGTTTGACTGCAAGGCCTGGGCTTATTACTCCAACTTCAACAAGGAGAAGGATATCCACTCAGGGCTGATTGGTCCCCTTTTAATCTGTAGACCCCAAACCCTCAACAGCCAATTTGAACAGCAGCTGAGCATCCCTGTGTTCTCGCTCCTCTTCATGGTGTTTGATGAAACCAAGAGCTGGTACATGGACgataacattaaaatgttctgtacGCCACCCTGCCAGATCAGAAGAAATGACCCAATTTTTGTAAAAGGCAATACGTTTTCTGCGATTAATGGGTATGTGGCGGAGACTCTGCCAGGCCTGGTGGTGGAACAGCACCATCCTGTCCGCTGGCATCTCCTTAACATGGGCAGCGATGGTGAAATTCATGCCGTCCATTTCCATGGCAATCCCTTTACTGTGCGAAGGGACCAGGAGCGCAGGATGAGCATCTACAACTTATACCCAGGTGTCTTTGGAATGGTTGAAATGAGGCCATCAATGGCTGGGACCTGGTTGATTGAGTGCATGATTGGTGATTATCAGCTGTCAGGAATGAGGGCAAAGATGCTGGTCTATAATCCAAAATGTGCTGAACCTCTGGGGATGAAATCGAAAAGGATTGCAGACTCCCAGATCACAGAGTCTGATCATTACGatgggTGGGAGTCTAAGCTAGCAAGACTGGACTTGTCTGGCTCAGTGAATGCCTGGACTGGAGTGAACAAAATGTCATGGATTCAGGTGGACCTGCTGGAACCCATGTTGATTCATCGAATTCTTACCCAGGGTGTGAAGCATTCTTTCTCCGAgagttttatttctcatttcatCATATCATACAGCTTGGACTCTGACATATGGAAGTTATACAAGGGAAATGGCACAAAGTCTAAGCGGATATTTGGGGGAAATGTGGATGGCTCTCAAGTAAAGGTGAACTATTTCTCTCCTCCAATAATCGCACGTTACATCAAACTCCACCCAGTGTCTTCCGTGATTAAACCCACGCTTCGAATGGAACTCATTGGCTGTGACTTAAACAGTTGCTCAATGCCCATGGGGATGGAGAATGGCCGGATTCCCAAAGATCGCATCAGCGCTTCCTCATTTTCAGGTTCCTGGCTTTCATCTTGGTACCCTTGGCTGGCCCGTCTAAACTCAGATGCCAGAATCAACGCCTGGAGACCTAAGGTCAATAACCCACATGAGTGGCTGCAGGTGGACTTTCAGTCAGTGAAAAGAATTACTGGAATCATAACCCAGGGAGCCAAAGAGATTTTCAAATACATGATGGTGACCGAATTCATCATTTCAGTCAGCTCTGATGGCGAAAACTGGTTTGCTGTTCAGGATGAGACGAGCTCCAGACAAAAGGTGCATTTCTGCGGTCTGTGA

Function

GO: NA

KEGG:

id description
K03899 F8; coagulation factor VIII

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104708 lncRNA downstream 274567 6812232 ~ 6813434 (-) True G83931
TU104676 lncRNA downstream 444478 6643222 ~ 6643523 (-) True G83901
TU104619 lncRNA downstream 451094 6569179 ~ 6636907 (-) True G83862
TU104642 lncRNA downstream 507582 6578854 ~ 6580419 (-) True G83878
TU104616 lncRNA downstream 556728 6530936 ~ 6531273 (-) True G83860
TU104820 lncRNA upstream 16369 7118073 ~ 7122449 (-) False AMCG00021153
TU104821 lncRNA upstream 17139 7118843 ~ 7122449 (-) False AMCG00021153
TU104822 lncRNA upstream 17139 7118843 ~ 7122449 (-) False AMCG00021153
TU104823 lncRNA upstream 17139 7118843 ~ 7122449 (-) False AMCG00021153
TU104824 lncRNA upstream 17139 7118843 ~ 7122449 (-) False AMCG00021153
AMCG00021152 mRNA downstream 8362 7079178 ~ 7079639 (-) True AMCG00021152
AMCG00021154 mRNA downstream 24745 7052536 ~ 7063256 (-) True AMCG00021154
AMCG00021145 mRNA downstream 243479 6815935 ~ 6844522 (-) True AMCG00021145
AMCG00021141 mRNA downstream 417789 6659537 ~ 6670212 (-) True AMCG00021141
AMCG00021135 mRNA downstream 545699 6538542 ~ 6542302 (-) True AMCG00021135
AMCG00021153 mRNA upstream 13716 7115420 ~ 7122491 (-) True AMCG00021153
AMCG00021156 mRNA upstream 103717 7205421 ~ 7222849 (-) True AMCG00021156
AMCG00021157 mRNA upstream 121762 7223466 ~ 7325452 (-) True AMCG00021157
AMCG00021161 mRNA upstream 338328 7440032 ~ 7441027 (-) True AMCG00021161
AMCG00021162 mRNA upstream 368053 7469757 ~ 7479786 (-) True AMCG00021162
TU104623 other downstream 541424 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 2336766 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 4406239 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 4628622 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 5110033 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 5425389 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 5618160 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 6525631 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 6768235 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6948270 14049974 ~ 14051897 (-) True G85115

Expression Profile