RNA id: AMCG00021160


Basic Information

Item Value
RNA id AMCG00021160
length 1122
RNA type mRNA
GC content 0.50
exon number 7
gene id AMCG00021160
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7404152 ~ 7420194 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGAACCCACAACACAAGCAGGCTCTGCTCCGTGTCTTCCCAAGCAGAATGGCAGCAGAGAGCAGTGCCAGCAGAGACTTGGTCATGGAGAAAGCAGGCCCTGAAGGCATGTATTGGAGCTGCCGAGAGCAGGAGTGTAAGCAGGCGATGTTAGCAAGAGACTGTCCTTCCAAACTGGAGGTCAGCGTGTCCCTGCTGACGGTGGACaccagctTTGCTCATTCAGTCGTTGTTCAAGTTCCCTATAAACAAATGAACATCACCATGGGTCAGTCTGTCACTCTTATCTGTGGCTACACCACTACAGCTAACCCGAACAACTCTAACATTGCATGGACTTTCCTTTCAGTGAAAACATATAAAATGGAACAGttttattactACCAAGGTGGACAGAGTGCTGTCACTGGGCAGTTTACAGGCAGGGTAACCGCTGTGCCAGGAGCAACAAATGCATCAATAACCATCAGTAACATGCAGCCTTCAGACACTGGAAGCTACACATGTACAGTCAACAATATGGATGATATGAATGGACAAAATCAAGGGAGCATTTTCGTGTCTGTCTTTGTCAAACCCTCAAAGCCCTACTGTGCTGTACACGGGTCGGTGGAATTAGGTCACCTGGTGTCTCTGATATGTAAATCGGAGGAAGGCATACCTGCACCGACTTACACCTGGCACAAACTAGACCAAGGCACTACCAGAAGTGCACTTGGTCAGATGAATACACAATCTGGAATTTTGTCTATTGGCAATCTGTCACAGTTTGAATTTGGGCAGTACCAGTGCAACTCCTCTAACAGCCTCGGGGTTGCAACTTGCACCGTTGAACTCTCTGAAGTTCACGATGGAGCCATAGCTGGAGCCGTCATCGGGGCAATTTTGGGAGCTGCTCTAATTGCTCTCATCGTTTGGATTGTGGCCCATAATGTAAGGAGGAGGAAATACAATGCCAAACAGGGAGCCACCACAGAAATGAAGGCTGTCCCCCAAGCTGACGACTCGGTGAAGTACAAAAACGTCCCCACCAAGGAGAGTGCCCCAGCCAACTCCAACTCTGTGGAAGTCGAAGCAGAGCCGATGGCCGCTGAGGCCAAACCTGAGACGGAAGAAGCCTAG

Function

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104856 lncRNA upstream 5634 7397060 ~ 7398518 (+) True G84049
TU104815 lncRNA upstream 282915 7115381 ~ 7121237 (+) True AMCG00021150
TU104771 lncRNA upstream 315913 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA upstream 317825 7085218 ~ 7086327 (+) False G83983
TU104762 lncRNA upstream 348020 7051197 ~ 7056132 (+) True G83976
TU104868 lncRNA downstream 5737 7425931 ~ 7426347 (+) True G84061
TU104888 lncRNA downstream 91175 7511369 ~ 7511988 (+) True G84078
TU104903 lncRNA downstream 133426 7553620 ~ 7560120 (+) True G84090
TU104910 lncRNA downstream 236999 7657193 ~ 7700683 (+) True G84095
TU104988 lncRNA downstream 558023 7978217 ~ 7979826 (+) True G84155
AMCG00021158 mRNA upstream 13311 7360360 ~ 7390841 (+) True AMCG00021158
AMCG00021151 mRNA upstream 257488 7128663 ~ 7146664 (+) True AMCG00021151
AMCG00021149 mRNA upstream 276095 7122574 ~ 7128057 (+) True AMCG00021149
AMCG00021150 mRNA upstream 285204 7111997 ~ 7118948 (+) False AMCG00021150
AMCG00021148 mRNA upstream 363301 7026401 ~ 7040851 (+) True AMCG00021148
AMCG00021163 mRNA downstream 4469 7424663 ~ 7430404 (+) True AMCG00021163
AMCG00021164 mRNA downstream 10235 7430429 ~ 7436018 (+) True AMCG00021164
AMCG00021159 mRNA downstream 28924 7449118 ~ 7471974 (+) True AMCG00021159
AMCG00021165 mRNA downstream 73785 7493979 ~ 7499040 (+) True AMCG00021165
AMCG00021167 mRNA downstream 341827 7762021 ~ 7766846 (+) True AMCG00021167
TU104813 other upstream 282915 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 282915 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3170396 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3274936 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3605369 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 1211533 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1996073 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3542954 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4655151 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8643406 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile