RNA id: AMCG00021163



Basic Information


Item Value
RNA id AMCG00021163
length 858
RNA type mRNA
GC content 0.46
exon number 2
gene id AMCG00021163
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7424663 ~ 7430404 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CAGCTGGAAGACAGACTTAAAGACAAACAGCAACTTAAGCTTATAACCGGAAAATGGTTTGAGGAACTGAAAGACAAACGCTATAAGGATGGCATAAATGGGACTGACCTTGTGGTGTCATCACTGGGGAAAAATAGCATGCTGGAATATCTGGAGGCACCACGGAGAACCACAGCCTCCTTCAGTGAAAAACACCAGGAGCAAACCCTTGGTGTTGTACTGGAAGAAGTGCTTGATGCCACAACTAGTACTGAAGTCCCTGAAAACAGTGAAACAGGGGCCCTGCGTTCCTGCAACTCCTTTCCAAATTCCCATGAGTCTTGTAGAGAAGCTGGGACTGATCTCTCTCTGGCGGGGTTATCGATCCTCCCAGACAGagtgaaaaaactatttaacaCTGCAGAACAATGTGACTCTTTGCTAAAGTGGTTTAGTACTGAGGACCTGGGGAGCTTTCCAAGATTACAGAGGTCCTTATCGCACCAGCCACTGAGGAAGGCAAATTGCAGACACTTTACTGAAGACTTACATAGGAAACTGTATTTCCTGAAGGCCTCTGAAGGGGCCTCGTcctctggtttgtttttcccaACCCCACAGCCTTCTCCAAGACTCATGTCACCCACTCCTGCACCGCGGTCCATGACACAAGATGACTGCTTCAATTATACGAATATGGAACAGACTATTCAATACAGGACGCATGCTATAGCACCGTTGTTGGCACATATGAGAGCTCAAGAAAAGGATAATGAGGTGGTAAAAAACTTTGAGGAAATTCCAAGCTCCTTGAATAACACAATAGAGGCCTTCAGAGAACCAAAGAGCCTGACCAATGAAGCCGTGCCAAACCTGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU104856 lncRNA upstream 26145 7397060 ~ 7398518 (+) True G84049
TU104815 lncRNA upstream 303426 7115381 ~ 7121237 (+) True AMCG00021150
TU104771 lncRNA upstream 336424 7085218 ~ 7088239 (+) True G83983
TU104772 lncRNA upstream 338336 7085218 ~ 7086327 (+) False G83983
TU104762 lncRNA upstream 368531 7051197 ~ 7056132 (+) True G83976
TU104888 lncRNA downstream 80965 7511369 ~ 7511988 (+) True G84078
TU104903 lncRNA downstream 123216 7553620 ~ 7560120 (+) True G84090
TU104910 lncRNA downstream 226789 7657193 ~ 7700683 (+) True G84095
TU104988 lncRNA downstream 547813 7978217 ~ 7979826 (+) True G84155
TU105006 lncRNA downstream 609820 8040224 ~ 8043169 (+) False AMCG00021180
AMCG00021160 mRNA upstream 4469 7404152 ~ 7420194 (+) True AMCG00021160
AMCG00021158 mRNA upstream 33822 7360360 ~ 7390841 (+) True AMCG00021158
AMCG00021151 mRNA upstream 277999 7128663 ~ 7146664 (+) True AMCG00021151
AMCG00021149 mRNA upstream 296606 7122574 ~ 7128057 (+) True AMCG00021149
AMCG00021150 mRNA upstream 305715 7111997 ~ 7118948 (+) False AMCG00021150
AMCG00021164 mRNA downstream 25 7430429 ~ 7436018 (+) True AMCG00021164
AMCG00021159 mRNA downstream 18714 7449118 ~ 7471974 (+) True AMCG00021159
AMCG00021165 mRNA downstream 63575 7493979 ~ 7499040 (+) True AMCG00021165
AMCG00021167 mRNA downstream 331617 7762021 ~ 7766846 (+) True AMCG00021167
AMCG00021168 mRNA downstream 356593 7786997 ~ 7801273 (+) True AMCG00021168
TU104813 other upstream 303426 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 303426 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3190907 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3295447 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3625880 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 1201323 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1985863 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3532744 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4644941 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8633196 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile