RNA id: AMCG00021165


Basic Information

Item Value
RNA id AMCG00021165
length 1368
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00021165
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7493979 ~ 7499040 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATAGCCCCGCCCCCACCTATTTGGGGGCGTGGTCTGCGTATCTGCGTCAAACCGGAAGTGTAGCTGACTGTGGCGGAAGACAGCGAGATCCAAAATGGCGTCCCCGAAAACTGCGCCGAAAGATGCACAGgtGATGGCACAGATTTTAAAAGACATGGGCATCACAGAGTATGAGCCCAGGGTCATAAATCAGATGCTGGAGTTCACATACAgatATGTGACAACTATCATAGAAGATGCAAAAATCTATGCCACCCATGCAAAGAAGTCAACTGTGGATGCCGATGATGTGAGATTAGCCATCCAGTGTCGCATGGACCAGTCCTTTACGTCTCCACCTCCAAGAGATTTTCTGCTGGAGGTGGCCAAACAGAAGAATCAGACGCCCCTGCCACTGATTAAGCCGTACTCAGGCCCACGTCTGCCTCCCGACCGCTACTGCCTAACTGCTCCCAACTACAGGCTGAAGTCCGTGCAGAAAAAGACTGTGGTTACTTCCAAAGTTGGGACGCCCGTGTCGCTGACCGGCCAGCGTTTCACTGTCCAGATCCCATCGTCTCAGTCCTCCACTGTAAAGTCAGccaCTCCGTCCACGCCTACAGTCCAAAACGTCCTCATCAACCCCTCGCTGATTGGCTCCAAAAACATTCTCATCACAACAAACATGGTGTCGTCACAGAACTCGGCCAACGATTCCAATCCGCTGAAGAGAAAACACGACGAGGACGACGATTATGATGCTTTATGACCTGAGAAGTGACCAATTCTGTCGGCCAATCGCTGGACAGTAATTCATTGTAAATACTGTAGATGCTAGACTGCTTagtatttccattttgtttcttgctCGGAGcggtttcctttttctttatgGACAGTTCACAAGACTGATTGCCAAGtttgtattaaaagaaaaaaaaaaaaggaacgaAGACAGCAGCagtcttatgtattttattgtatattattataaaccaGCTTAACAAAATGCTGATAAATTAAGTATTGGTGGTTATCAGCTCTGTGATTGGATGTAGATAATTTGTAGTCTGAAAGCACTCTGGATAATGTTTTGCAAGGAGTGCATGGGTGAAGAAGAATATAGCGAAAAAGTTGTAGTGTAACAATAATGCTGCCTCAGTGCAATCCACGATTGTAAATCATACTGATCTGGTCTCTTCTGTAACTTATAGCAATCTTCTCAGTAACCAGTAGCAGATATGAGATTATGCTCATAGTCACTAGACTTTCTCTCCAGTGAATGGACTATCAAACAAAGAAATAGTTTGTCTCCTGTTCCACTTGTATTATAAAAGGAGTGATACCTTTCCCAATAAATGAACACCaattgtttgttgattttaa

Function

GO:

id name namespace
GO:0006352 DNA-templated transcription, initiation biological_process
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K03133 TAF9B, TAF9; transcription initiation factor TFIID subunit 9B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104868 lncRNA upstream 67632 7425931 ~ 7426347 (+) True G84061
TU104856 lncRNA upstream 95461 7397060 ~ 7398518 (+) True G84049
TU104815 lncRNA upstream 372742 7115381 ~ 7121237 (+) True AMCG00021150
TU104771 lncRNA upstream 405740 7085218 ~ 7088239 (+) True G83983
TU104888 lncRNA downstream 12329 7511369 ~ 7511988 (+) True G84078
TU104903 lncRNA downstream 54580 7553620 ~ 7560120 (+) True G84090
TU104910 lncRNA downstream 158153 7657193 ~ 7700683 (+) True G84095
TU104988 lncRNA downstream 479177 7978217 ~ 7979826 (+) True G84155
TU105006 lncRNA downstream 541184 8040224 ~ 8043169 (+) False AMCG00021180
AMCG00021159 mRNA upstream 22005 7449118 ~ 7471974 (+) True AMCG00021159
AMCG00021164 mRNA upstream 57961 7430429 ~ 7436018 (+) True AMCG00021164
AMCG00021163 mRNA upstream 63575 7424663 ~ 7430404 (+) True AMCG00021163
AMCG00021160 mRNA upstream 73785 7404152 ~ 7420194 (+) True AMCG00021160
AMCG00021158 mRNA upstream 103138 7360360 ~ 7390841 (+) True AMCG00021158
AMCG00021167 mRNA downstream 262981 7762021 ~ 7766846 (+) True AMCG00021167
AMCG00021168 mRNA downstream 287957 7786997 ~ 7801273 (+) True AMCG00021168
AMCG00021172 mRNA downstream 373116 7872156 ~ 7906034 (+) True AMCG00021172
AMCG00021170 mRNA downstream 426143 7925183 ~ 7931516 (+) True AMCG00021170
AMCG00021171 mRNA downstream 435315 7934355 ~ 7949586 (+) True AMCG00021171
TU104813 other upstream 372742 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 372742 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3260223 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3364763 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3695196 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 1132687 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1917227 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3464108 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4576305 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8564560 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile