RNA id: AMCG00021167


Basic Information

Item Value
RNA id AMCG00021167
length 2528
RNA type mRNA
GC content 0.41
exon number 2
gene id AMCG00021167
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7762021 ~ 7766846 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTCTAATCTTAGCTGTGTTTATTCACGCAGATTATGCCTGGCCTTTGCCCAAAGCCTTGTGTCCCATTTGGATCTACCTGGACGTGCTCTTTTCAACTGCTTCCATCATGCACCTCTGCGCCATATCTCTGGACCGCTACGTGGCCATCCGGAACCCCATCGAGCACAGCCGCTTCAACTCACGCACCAAGGCCATGATGAAGATTGCAGCCGTCTGGACCATATCCATCGGGGTATCGATGCCCATCCCTGTCATAGGCCTTCAGAATGAAGCCAAGGTCCTTGTGAACGGGACCTGCAACCTTAATGAAAAAAACTTTGTCCTCATTGGCTCCTTTGTGGCTTTTTTCATCCCCCTGATCATCATGGTGGTCACGTACTGCTTGACTATACAGGTTCTGCAGAAGCAGGCCACTGTCTTCCTCTATAAGGAGAATCCCAAGGCAGCCAGACGCAGCAGCCTAAACTGCTTGAAGAAGGATTCTTCCCAGACCCCCTCCGACAATATCTCCATAATCCAGAGCTCGGAGGGGGCGTCACAGCTCAACTCGCCAGTCAACAGGGACATGGGGCGTAAGGGCATGATGCAGGCCATCAAGAATGAAAGGAGGGCCTCCAAGGTCCTGGGAGTGGTTTTCTTCTTGTTCCTGCTGATGTGGTGCCCCTTCTTCATCACCAATGTCATGTTTGTCCTCTGCAAGGATGTCTGTAACAAGGACCTGCTGTTGGAGCTGCTCAATGTCTTTGTGTGGGTGGGTTACATCTCCTCTGGCATTAACCCCTTGGTCTACACTCTCTTCAACAAAAATTACCGGCGGGCCTTCTCCAATTACATCCGCTGCCAGTATAAGACCCCCAAAAAGGCCTTCATGAACGTGTATCAGCCTCAGATCGTCACACCCACCATGTACGGCAAAGACATTAACCTGAACAGTAATTGCAGGAACGGAAACGAATGCAACAGCATGGACATGGACGATACTGATGAGGCTTTGGAGATGCAGCCTGGGACATCTGAGGTGTCCATCAACAGCTGCAATGTTACCAGTGATAAGGTCAGCTGTGTGTAATGGTTGACCTCTTCAGATGTGTTTGcagatggggtgggggggggtatgCATGGAAAGCATTTCAGCCCCAGCTACCTAACACCCCAATGCATtagtgttttgaataaaataatgtataggtaaaacacaatgtaaataatgtatccaTAAATGAAATGGGCTTTTGTACATCCTTTTTTTCTATACATTCCTCAGTTTAAAGTGAACACGAATAgaaatgattgtattattatgtaagaataataaaaatagattggGAAATCGAAGAGGAGGAcgacaaaggggaaaaaaagtaccAGCAACATTATATAAAGCCGACAGCTTACGAGTTATGAAGTCTTGTTCATCTGCTATGTATCTTGTTTAGTATAaggcaatgttttaatttagcattGCAGTTCTGCAAAAAAGTACTATATTTTGAgagtttcatttatttcaaagcgCTCAGGCCTGAagcattcccccccccccatctctttTAATCGTTTTTTAGCTTAGCACCTAGTGCAGTGTCACAGCGCCACTGTGTGGCAGTTGAGGAAAGTCAAACCCCATCAACTGTAGTATCTTGCATTCTCAGGCGTTCATGCTCGAGTGCACCAGAGCCGAGAGAGGATCTTATACAGGGCTGTTATTGGAAAATGAAGCAACAGAAAACATGAAGAATTGTACAAGCTGAACTGGAAATATCCCCAgttaactttttatttgttcctAGATAAATCATTCATATCAGACAAAAGCCTCTCACGCCAAATATGTTAAAGCAATAGCTATGTGTAATTCAGgttgtaaatgttatatttctgGACAAAGTTCCAGGCTAATCTTGTGTTTGTTGCAGAACTATAGCAAAACAAGTTGCTTCTTTGGGTggatataaagaatgaaaaagggAAATGGACCAGATGACACACAATTTCACTATGGTTCAGCAAAGTCTGATGAACTATgaaactggttttatttttttaaccattagTGTTACTTTGTGAGAacttaaactatttttattaaaggtgTTCAATAAGAAATCTCTGCTTACGTTTTTTAAAAGTGGAATGTAATGCATTTCCAGATGGAAACAAAGATTTTTCCAGACTGTAAATGTTGGGCTATGATGACAAAATTCCCATATAAAGAGCAAGTGTTGAAACTATTAATGCAAATCCATTTGTGGACATAACTATGCTATTAATGTTCTTTCAAGTACCCGTGCATTTAGAATAATGAGCAGTTGTCTTTTTATTTCTAGCATTTATTACTTCCGTGAACATTAGCAAAGCAACGGTATAaaattttgtttacatttgtctACATTATGTTTGTGTGATGctgctatttatttaataaaggtGGTTTGTTACTATGTCTACTAAGATGTGTATTTTACACAAATAGAGCatgatatgcattttattattatggatttattataaataatgtatttttgag

Function

GO:

id name namespace
GO:0007610 behavior biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104910 lncRNA upstream 61338 7657193 ~ 7700683 (+) True G84095
TU104903 lncRNA upstream 201901 7553620 ~ 7560120 (+) True G84090
TU104888 lncRNA upstream 250033 7511369 ~ 7511988 (+) True G84078
TU104868 lncRNA upstream 335674 7425931 ~ 7426347 (+) True G84061
TU104856 lncRNA upstream 363503 7397060 ~ 7398518 (+) True G84049
TU104988 lncRNA downstream 211371 7978217 ~ 7979826 (+) True G84155
TU105006 lncRNA downstream 273378 8040224 ~ 8043169 (+) False AMCG00021180
TU105048 lncRNA downstream 434992 8201838 ~ 8207378 (+) True G84196
TU105099 lncRNA downstream 608485 8375331 ~ 8376038 (+) True G84244
TU105139 lncRNA downstream 789115 8555961 ~ 8558418 (+) True G84276
AMCG00021165 mRNA upstream 262981 7493979 ~ 7499040 (+) True AMCG00021165
AMCG00021159 mRNA upstream 290047 7449118 ~ 7471974 (+) True AMCG00021159
AMCG00021164 mRNA upstream 326003 7430429 ~ 7436018 (+) True AMCG00021164
AMCG00021163 mRNA upstream 331617 7424663 ~ 7430404 (+) True AMCG00021163
AMCG00021160 mRNA upstream 341827 7404152 ~ 7420194 (+) True AMCG00021160
AMCG00021168 mRNA downstream 20151 7786997 ~ 7801273 (+) True AMCG00021168
AMCG00021172 mRNA downstream 105310 7872156 ~ 7906034 (+) True AMCG00021172
AMCG00021170 mRNA downstream 158337 7925183 ~ 7931516 (+) True AMCG00021170
AMCG00021171 mRNA downstream 167509 7934355 ~ 7949586 (+) True AMCG00021171
AMCG00021174 mRNA downstream 265159 8032005 ~ 8035358 (+) True AMCG00021174
TU104813 other upstream 640784 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 640784 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3528265 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3632805 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 3963238 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 864881 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1649421 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 3196302 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4308499 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8296754 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile