RNA id: AMCG00021169


Basic Information

Item Value
RNA id AMCG00021169
length 984
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00021169
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7815128 ~ 7816111 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCAACCAACTACAAAACACCTCCTCCCTTAATTGGCTAAACTGGAATTTGCAGGACGATAGAAACTCCTCCCCCGTCAGGACCTCGGACCTGCGGCCAGTGCCCGTCAATCCATGGGACATCGCGCTGTGCGTCACCGGGACTCTCATTTCTTGCGAGAACGCCATTGTAATCGCCATCCTGTTTTACACGCCCACCCTCCGGGCAcccatgttcattttaataggAAGCCTTGCCTTTGCAGACCTCCTGGCTGGACTGGGCCTGATCCTCAATTTCATATTCACCTACATGCTGAGGTCAGACTTTGTGTCTCTCATCTCTGCCGGACTGCTCATCGCCGCCTTTTCCGCCTCTGTGTGCAACATCTTGGCGATCACCGTGGACAGATACTTGTCTCTGTACAATGCCCTGACCTACCACACAGAGAGGACGGTGACTTTTACCTACATGATGCTGGTTTGTCTTTGGCTAACGTGCATCGGTTTGGGATTGCTGCCGCTCTTGGGCTGGAACTGTGTGGAGGACGGGTCCACCTGCAGTGTGATCCGCCCTGTGACCAAAAACAATGCCGCTGTGCTCGCCGTGACCTTTTTGCTGATCTTCGCCCTCATGATGCAGCTGTACCTCCAGATCTGCAAAATCGCCTTCAGGCACGCCCAGCAGATTGCTGTCCAACATCAGTTCATGGCTACTTCCCACGCTTCCTCAACCACAAAGGGTGTGTCGACCTTATCCATCATCCTGGGGACCTTTGCTTTGTGTTGGGTCCCTGTCGCCATGTACGCCCTGGTGGCAGACTCCAGTTACCCCTTGATTTACACCTATGCCACCGTCCTGCCTGCCACTTGCAACTCAGTCATTAATCCTATCATTTACGCCTTCAGAAACCCTGACATTCAGAAATCGCTATGGTTGGCTTGCTGCGGTTGTGTTCCTTCTAATTTCTCCTTGAGACCAAGGACATCAAGTGATGTATAG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104925 lncRNA downstream 9591 7801129 ~ 7805537 (-) True G84108
TU104908 lncRNA downstream 171128 7559855 ~ 7644000 (-) True G84093
TU104906 lncRNA downstream 255008 7553620 ~ 7560120 (-) False G84093
TU104901 lncRNA downstream 303139 7511561 ~ 7511989 (-) True G84089
TU104891 lncRNA downstream 345700 7462728 ~ 7469428 (-) True G84081
TU104961 lncRNA upstream 107910 7924021 ~ 7931516 (-) True G84132
TU104989 lncRNA upstream 162139 7978250 ~ 7979823 (-) True G84156
TU105033 lncRNA upstream 248420 8064531 ~ 8116827 (-) False G84184
TU105039 lncRNA upstream 255982 8072093 ~ 8074698 (-) True G84188
TU105031 lncRNA upstream 293540 8109651 ~ 8116827 (-) True G84184
AMCG00021166 mRNA downstream 323214 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021162 mRNA downstream 335342 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021161 mRNA downstream 374101 7440032 ~ 7441027 (-) True AMCG00021161
AMCG00021157 mRNA downstream 489676 7223466 ~ 7325452 (-) True AMCG00021157
AMCG00021156 mRNA downstream 592279 7205421 ~ 7222849 (-) True AMCG00021156
AMCG00021173 mRNA upstream 90047 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021175 mRNA upstream 136961 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021176 mRNA upstream 166289 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021188 mRNA upstream 448838 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021192 mRNA upstream 545820 8361931 ~ 8372742 (-) True AMCG00021192
TU104623 other downstream 1268551 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3063893 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5133366 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5355749 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 5837160 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4710982 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4903753 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5811224 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 6053828 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6233863 14049974 ~ 14051897 (-) True G85115

Expression Profile