RNA id: AMCG00021173


Basic Information

Item Value
RNA id AMCG00021173
length 2338
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00021173
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7906158 ~ 7914299 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTGCTAAGTGTATAGCATTCAATAACACAGCTATTCCAGCTTTGCTTTTTCGtaataataaagctttattgTAGCTGATGTTTGGTGCTGTTTAAGACATTGAAAGAAAACTCACTGGTTATtaggaagagaagaaaacaagAACGTGTAGAGCAAGATGCCCTTTTCCAGAGGTAAAAAGCAGACCATCAGCAAGATACCCCAGCTGAATGCCAAGGCCGGGTGGATGGACAATGTTCAGTCCAAGCAGGACGATGGCAACCAGATGAAGcgctccccctcctccccccaggGTGCCCCGAAAAAAAGATCTGCATTTGTGGACATCACCAATGCTAGCAAAGTTCTGCCGGCCCAGACCAAGAAGAGAGAACCTGTTAAGTCCTCCAAGAAGACACAGAAAACTACCATTTTGGCCAAAAATGAGATTAATCTAAAAAAGTCTGGCTCTGTCACCTtggaaggaaaaccagagaaGAAAAAGGTGGGGAAAACGGTAGAAAGAGAACCTGAGGCACCGCAACCCGAGGAATCTCAACCTGAAGAGAGATGCTCAGAGGTCCCAGAAGAATTTGACATTGATAAAGAACACCAAGGGGATAGCTTCATGACTGCGGAGTATGCCAAAGACATTTTTGATTACATGAAAGCAAGAGAGGAGAAGTTCATCATTAAAGATTACATGGACAAACAGCCTGACCTGAATAGGGAGATGAGAGGCATTTTGGTGGACTGGATGGTAGAAGTTCAGGAGAACTTTGAGCTGAACCATGAGACACTGTACCTGGCTGTGAAACTGACCGATCACTACCTGTCGGAAACTGTGTCAATGAGAGAGAACCTACAGCTCATCGGGTCAACAACCATGCTCATCGCCTCCAAATTCGAGGAACGTTGCCCTCCCTGTGTGGATGACTTCTTGTACATCTGTGATGATGCTTACAAGAGGGAGGAGATAATATCCATGGAAATTAACATTCTACAGGCGCTGAAGTTTGACATCAACATTCCAGTGCCCTACCGCTTCCTCCGGAGATATGCCAAGTGTATCCAAGCCAACATGGAGACTCTAACTCTGGCACGCTATATCTGTGAGCTGaccctgcaggagctggagTTTGTACCCGAGAGGGCGTCCAAGCTGGCCTCGGCCTGCCTGCTCCTGGCTATGCTCATGAAGGATCTGGGTGACTGGACTCCCATCCTGCAGTATCACACGGGCTACACGCTGACAGACCTGCTTCCTCTGGTGAAGAGGCTAAACTTCATGCTCACCTACGTGGATGACAAGTTCAAGGCTGTCCGAAGCAAATACTCCCACAAGGTGTTTTTTGAAGTGGCAAAGATCAAGTCTCTGGACATAAAGAAGTTACATGAGGTTCTTGACTGAATTCTGGAGGCATTCATTTTCTAAAGAAATGTATAGTATGcaaaaagtgtatatatttgtatttatttgatatgtatgtatggctatgtaaagaaaataataattgtactttaatattatACTTCAGTGTCCAGTATAGGCatccagttgtttttttgttttaatgaaggaGAAAAGGCAAGCTTTAAAAACTAACTGCCCGAGCATGGCACCTTCAAAAGTTATgcgttttaaaattaaatgctcATTCATGGTTTTAGTGTATAGAATTCAAAGTGAAGTTTTTCCATTATTGGATTAATGTGGTCTTTTCATCTTGATTTAATCTCCATCTTTCCCCAATAACATATGGTCTTGACTGCACCCTGATATTAATTAGGGAATTATCCTTTTGACAACTCCTTTAGAAAAGCTACAGTGATTTATGACTCAGATTGAATACTGGTACAGAACTTACCATCTGGTGGTGCAGAGACCAAGGAAGATTTCCCACTGGGAAATATTTTGAACATCTTATGAGGTAGAATGAATTATGAAACTAAATCAATGCACTGACAAAATAGCTTGCCTCCTAGTGATTTACCAGGGAGGCAGGTAAACATGTCTCGTAATGTGCTGCCTTTGTGTGGGATTGTGACTGGTTTTAAATGGaagcattttataaattaacCACTATCCATTAGCCTTCAGATGTCTGTAGAGGGGATTCtgtaaacattttgtgaaaagtCATAGAATATATTCTATTACATTTAGGTAATCATACACGTTTGTGTTTGTCCCTCCTCCCTACAAACTAGTATTTTGTAGTGTACATATTTACAAcctttgtataaatgttaaagttgttattttaaaactacattaggaattgtatcttaaaaaaaaaaaacgtatctAGACTAATGTATTAAAAGGCTTGTGTTCTACATAAAAATCTATTCTAC

Function

GO:

id name namespace
GO:0051726 regulation of cell cycle biological_process

KEGG:

id description
K21771 CCNB3; G2/mitotic-specific cyclin-B3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104925 lncRNA downstream 100621 7801129 ~ 7805537 (-) True G84108
TU104908 lncRNA downstream 262158 7559855 ~ 7644000 (-) True G84093
TU104906 lncRNA downstream 346038 7553620 ~ 7560120 (-) False G84093
TU104901 lncRNA downstream 394169 7511561 ~ 7511989 (-) True G84089
TU104891 lncRNA downstream 436730 7462728 ~ 7469428 (-) True G84081
TU104961 lncRNA upstream 9722 7924021 ~ 7931516 (-) True G84132
TU104989 lncRNA upstream 63951 7978250 ~ 7979823 (-) True G84156
TU105033 lncRNA upstream 150232 8064531 ~ 8116827 (-) False G84184
TU105039 lncRNA upstream 157794 8072093 ~ 8074698 (-) True G84188
TU105031 lncRNA upstream 195352 8109651 ~ 8116827 (-) True G84184
AMCG00021169 mRNA downstream 90047 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021166 mRNA downstream 414244 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021162 mRNA downstream 426372 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021161 mRNA downstream 465131 7440032 ~ 7441027 (-) True AMCG00021161
AMCG00021157 mRNA downstream 580706 7223466 ~ 7325452 (-) True AMCG00021157
AMCG00021175 mRNA upstream 38773 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021176 mRNA upstream 68101 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021188 mRNA upstream 350650 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021192 mRNA upstream 447632 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021193 mRNA upstream 465690 8379989 ~ 8515922 (-) True AMCG00021193
TU104623 other downstream 1359581 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3154923 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5224396 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5446779 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 5928190 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4612794 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4805565 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5713036 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5955640 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6135675 14049974 ~ 14051897 (-) True G85115

Expression Profile