RNA id: AMCG00021175


Basic Information

Item Value
RNA id AMCG00021175
length 6570
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00021175
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7953072 ~ 7976121 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGACAGGAAATTCAGTCGAAATTACAGTAGACAATGTCTGCGAGCAGCCGGGATAAGGTCCTGGGAGAATGAAGGAATACGTGTTTATTGTTTGAGAAACATGTCGTCCTGTGTTGTGACCATCTTCAATCGAGCATGAAGACGATGGCCAAGACGTATCTGTAGGAGAAATGACAAGCAAAGGAAGTGGGCAACAAGGATCAATCCTCCAGCTTGTCCTGATCCATTTAAAAGCCGTGTCATAAGACACATCGGCGTCTGGTGGACGCGTCTCAGGCCGATAAGGGCTTTCAAGGTGAGAATGGAGAACCCTGGCTACTGCAGCGAGAGCTTCAACAGCCTGCAGAGTGGCACCAGCGACGAGGACATGGTGGAGATAACCGGTGCCACAATGGACTTCTCTGTCACAGATGACGTGCCGCCACTGGATCGGGATTTTACTGGAGGCTACAGCACTCACAGTGGTGAAGGGCTGAATGGCACTAGCAAGCTGATGGATTTCCTCGACGAGCCCGTCCCTGGGGTGGGAACGTACGAGGACTTCAACACCATCGACTGGGTGAGAGAGAAGTCCAAGGACCGCGATCGCCATAGAGAGATTGCAAGTAAAAGCAAGGAGTCTACATGGGCCCTGATCCACAGTGTGAGCGATGCTTTCTCTGGCTGGCTGCTCATGCTTCTCGTTGGGTTAATGGCAGGTGCCCTGGCAGGTGGAATCGACATCTCTGCTCACTGGATGACCGATCTGAAGGAGGGGGTGTGTCTGGTGGGGTTCTGGTTCAATCATGAGCACTGCTGCTGGACCTCCAATGAGACCACCTTCGTGGAGAGGGACAAGTGCCCTCAGTGGAAGAGCTGGGCTGAGCTAATCATCGGCCAGTCTGAGGGTCCGTTTGCTTACATCATGAACTACCTGATGTATGTCAGCTGGGCCCTGCTCTTCTCCTTCCTGGCTGTATCCCTGGTTAGATCATTTGCCCCCTATGCCTGTGGATCTGGTATCCCAGAGATCAAGACCATCCTGAGTGGATTCATCATCAGGGGCTACCTGGGGAAATGGACGCTTATGATTAAGACCATCACCCTGGTGCTGGCTGTGTCCTCTGGCCTGAGTCTGGGCAAGGAGGGGCCCCTGGTGCATGTGGCCTGCTGCTGTGGCAACATCCTGTGCCATCTCTTCACCAAGTACCGCAAGAATGAGGCCAAGCGCAGAGAGGTGCTCTCTGCGGCGTCGGCAGTGGGGGTGTCGGTGGCGTTCGGCGCGCCTATCGGAGGAGTCCTCTTCAGCCTGGAAGAGGTCAGCTACTACTTCCCCCTGAAGACGCTGTGGCGCTCCTTCTTCGCCGCCCTGGTGGCCGCCTTCACCCTGCGCTCCATCAACCCCTTCGGCAACAGCCGGCTCGTGCTGTTCTATGTAGAGTTCCACAGCCCGTGGCACCTGCTGGAGCTGGTGCCGTTCATCATGCTGGGCATCTTTGGTGGCTTGTGGGGGGCCTTCTTCATCCGCACCAACATTGCCTGGTGCCGCCGGCGCAAGACCACCAAGCTGGGTCACTACCCGGTGCTGGAAGTGCTGGTGGTGACCGCGGTCACGGCCATCCTGGCTTTCCCCAACGACTACACCCGCATCAGCACCAGTGAGCTCATCTCAGAGCTCTTCAACGACTGCGGCCTGCTGGACTCCTCAAAGCTCTGTGACTACGTTAGCCTCAACAGCTCCAAGAGCAGCAACGAGCTGCCTGACCGCCCGGCGAACCAAAACGTCTACACCGCCTTGTGGCAGCTGGCTCTGGCGCTTATCTTCAAGGTCCTCATCACCGTTGTTACCTTTGGCATGAAGGTTCCATCAGGCCTCTTCATCCCCAGCATGGCAGTTGGGGCGATTGCTGGCAGACTGCTGGGTGTGGGAATGGAGCAGCTTGCCTACTACCATCATGACTGGGTGATCTTCAAGGGCTGGTGTTCCCCTGGGGCAGACTGCATCACTCCAGGCCTCTATGCCATGGTGGGCGCAGCAGCCTGTCTCGGCGGAGTGACGAGGATGACGGTGTCTCTGGTGGTCATCATGTTTGAGCTGACAGGTGGGCTGGAATACATTGTGCCCTTAATGGCGGCAGCAATGACCAGCAAGTGGGTGGCCGACGCCATCGGGCGAGAGGGCATCTATGACGCCCATATCCGCCTAAATGGCTACCCCTTCCTGGAAGCCAAGGAGGAGTTCGGCCACAAGACCTTGGCCATGGACGTCATGCGGCCGAGGAGGAACGACCCTCCCTTGACGGTGCTCACCCAGGACAGCATGAAAGTGGAGGATGTGGAGACGCTCATCAGCGAGACCACCTACAGCGGCTTCCCCGTGGTGGTGTCCCATGAGTCCCAGCGGCTGGTGGGCTTCGTCCTGAGACGAGACCTGGTCATCTCTATAGAAAATGCCCGGAAGCGTCAGGATGGCATCGTGAGCACGTCCAACATTTACTTCACGGAGTACATACCGCCGCTGCCCCCCACCAGCCCGGCCACCCTCAAACTGCGAGGCATCATGGACCTCAGCCCCTTTACTGTGACGGACCACACGCCCATGGAGATTGTGGTGGACATCTTCCGGAAGCTGGGCCTGCGCCAGTGTCTGGTCACACACAACGGGCGTCTTTTAGGAATTATCACCAAGAAGgacatattaaaacacatgGCTCAGATGGCTAACCGGGATCCCGACTCCATTCTCTTCAACTGAAGCCTCCTGCCCTACTGACCCACAGAGACTGAGATCCACCTGTTGGTCATTAATGATGACTGCACACTGGCCAGAATTATTTGCACTACTATCATTGGGAGAAATCCACCTTCACTGGGCCGGACTGAGTGCTCTGTGTGACTTGTTGAGCAGTATTACCGATGAGAAGACCTTTCCATGAGCCACAGGTCTTCTGCTTTCATATCGGAGACGTGGTTTGGTGGGATTTGAGAACTTCACCCTGTGATCTTTTGATGCATATCATCCCGTGAGAACTGTAAGAAGAAGAATCCAATTCCTGGGCTGTAACTAGATGACCGCTGAGTCACAGTAAAACTCTGCATGGAAAAGCTTTCTGGCGGCACTTGCGTAAATCAAATGGGACAGAAGCATGAGTAGAGAGGAACTGATTAAAATTCCTGGAGAAAAGGCCTCCATCTGATTCTTGAGTCCTCTGCTGTCGTTAGACCTGTTTGGTCTACGAAATTGCAGTGGAATTGGTATTCATTTAATTGAGCTTTTATGAAATGAGGTTCACTTCCTAAAAACGCCTTGGAATTTGCAACCGTAGATCTTTTTTGTTAAAGAAAGGCACTAAACTGATCTTGTCATGAAAACTAATCTGCACAAGGCATGTTTCCACCTTTCTCCTGCAGCGATGATGGTTAAATCTGAGCACGCCTTCCCAAACCAATCAAGTCACATTCAAATGAAGAGAAAGTAGACACAGATTGGATATCTACTTGTGTTTCTAAAACTATTCAGGATGAATCTCACTATGACAAACAAGTAATGTCTGTGTCCCATAATTGccctttttattttccccaatgATGAAGAGTTGTCTTTTTTTCATGTGTAAATCAAGAAtgatgtggaaaaatacaaactttgGTGCTTATTATTCATGGTACTGGAACTTAGTTTAACCCGAATGATAAATATCTTGCTTAAGGATATTGTTCAAATACAGCTGATATGAACTTACTTGAATACTACCATATCAGTCTATGGaatgaacaaacatttaaatgcattaaagaaGGGAACCTGTTATTTGTCTCTGACCAGTTCATCATAAGCTAaggtctacacacacacacacactttcatatATATGAGTAAATTAATGTGAATGAACGGATCACCTGTTACCATATAGGCTCTCCAAAGTAAATGTTCAGTCTTGCCATTATGCCTTGTTAAATGTGAGACCATTTGAGTCGTGTTAGTTCATTTTTTCGGTCTAGGTAATATTTGAATGGTCATTACCCACTTGCAAAATATGGCTTGGCAAATCATAAACGTTGGCTTCTTTGTAGGTCTCTAAATCCAGATCTTCCGGCATGTGGAATAAGGCACTCAAAATTGAAACTGGGCATCTTTGTCTAAAGGGTTGTTCCTTTCCTATGTGATCAACTTGCCTTCAAGTACAAAAATTTAAATAACCAtatcattctttatttattttttttatcagaaacAAATTAACCGTATCCATCTTAAATACCTTAATGTGGCTAATGTgcaattttaattgaaagtcTAATCCTACTGTTAGGTTTCatgtatgtaaatattgaatatggcaaatataACGAATTCAGAACTTCATAGCTGTCCCCAATGAAGGAAATCTATTAGGGCAattcattaatcaattaatatacAATTGCCAGACTGCTAACTTGGATAAAACAATGTGTTCTACACCAAGCCATTCATGTAGTGAATTAGACCACAGGTGTTCTAAGTAAGGGAGAGATGCCAACTTTTGCCTGCAAGCATGAGCCATAACTGCACTTAAAACCAGCAGGAAATTTCTCTGTCCTCAAGGTGTCAGCGAAGTATACTGAGTGCAGCCATTAGTTAGCTAGAAAGACTCCTAGTGCTTCCTTGTTCAGTAAATCCCTGCTGATTTTTAATACAAAGTACTTCATATTGTAGCAAAgagaatatttgtttgttttgtctgtttttttctgaagcagACATGGCTTCAGTCACAATGGCTACTCTTGAGAAGATTAATCTGATTGGCCCATTATGATTTGTCCTTAAAAAGAGTTAACGGCAATACCTTGGCACGTATGTAGCCTATGTACTCCATTATGCATGGCTGTAAACTATAGATCTCCTTGCTGTCACCCCTCTTTGATTATGCAGCTCCATCCAGTAATGGCATGAATCTGTACTGGGCTAAACGCTGCACACAGAACAATTGAAGCCTTGTGTGCTGGGTTTCTGTATTGCCCATGACTGCCAGCACAGAACAGAAACTGAGTTACCAGCCTTGTCTAATTAAAGACATTTGTGTGGGGTCATGTTAGCTAATAGATTTTCACatgatttttctgtttaatgtggTCCTTATTTTTGgtgatggaaaaaataaataagaaacttGACAACAGTATGAATATATGGAAATTCCACTCTAAGTACCATATTCATGTGAACAGTTAATAAATAACAGCCTGAGTTTAGGTTCGGGTAGACCTATTGCCTCTTTCCTAATTGAAAGATTTGGGTATATAGTATAGACTGTGAAGaatgaaacataaataacttaaacataaagaaaatgttttgttaattaaaatggatgTTCTGGAAATGACTAAATGATTGAGAAAGCAAAGGGCAAATGAAGCCTTGACTTTCCTCAGAAAGGGCTGCTTAACCTGTGCCCTCTGTGTAAGAGTAGATTAATAATTGACCATTTCGATTCAGTAAGGATTCCTATGTGTATTGTGTTCCCTATTTAATCCCTGGAGGAGAAGGGTTCATTGTTTGGTCTGAGAGGAGCTGCAGGGGTGTGAATGTGTTTGGGATGTCAATCGAgagcaaccaaaaaaaacaaaatgcaggatgttttgaattattttttaagatggcTCTAGGAGGGCTTGAGTCTTGGAAGTCAATTTCCTGCTCTTTCTCAAAAGCAGTGTTTGTATAGTCTGGGAAGGTTGCATTATTTAACAAAGAGATTCataaaactgaacagaaatTAGTAGGCTTGGAAGCCTAGATCCAATtagtattgttttcttattttatttaagaccGATATGTGATAAAATAGGTCAACTGTACATCCGAAATCCCATCTGTATATTCTGCAGCATGCAAAAAGAATGACTGAAACCAGATGTTGGGCTTTCCCTGAGCTTTACTTCTGTTTGCTGTTGAAGTCTGGGAACACAGGTTGTCCCCACCGTGCTGAGTGCCTTCCTCTATTACCATTTTGTTGTCAATGTGTGACACTCTGTGGAAGAACAAAAGCAGATTAGAGAGACTGTagaaacaacatgtttttttctatgtGAATATATGGTACTTTGTCACTGCAAACAATATGAGGGGTATTGCTTGTGTaggaaaggaaacaatccaGACAAAGGGCTAACTTTCAGTTTCCCACAACATACAGGTAGATCACAGCAGACCCTTTTATGACAGAAAACACTATCCCTTTAGTGTTGAAAACCGCCAGTGACTCACCTAACCTGGATCTTGTGCTTATGTTCATGTCTGAGAATGCCACGTTTAGTTTTAAAGGTTCTGTTGTTTTGAGACTGGCCCGTATCTCTTCAAAAAGACCGTGTCTGCCCAGGAACGCTACAGCAGCCCCCGAAGCACTCCACAGCATCATGATTCtgttgattgatttaatttttacttgttttttgtatgaGGACAAAAACCTCAACATTTGTAACATTCCTTTATATTATGTCATACTCGCTGCGCATGAATGTGAATAAGAGATATATAATTTATTCCTGTAATCAACTCacctttttaatgaattaaaaactgaaacttgAAAA

Function

GO: NA

KEGG:

id description
K05012 CLCN3_4_5; chloride channel 3/4/5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104961 lncRNA downstream 21556 7924021 ~ 7931516 (-) True G84132
TU104925 lncRNA downstream 147535 7801129 ~ 7805537 (-) True G84108
TU104908 lncRNA downstream 309072 7559855 ~ 7644000 (-) True G84093
TU104906 lncRNA downstream 392952 7553620 ~ 7560120 (-) False G84093
TU104901 lncRNA downstream 441083 7511561 ~ 7511989 (-) True G84089
TU104989 lncRNA upstream 2129 7978250 ~ 7979823 (-) True G84156
TU105033 lncRNA upstream 88410 8064531 ~ 8116827 (-) False G84184
TU105039 lncRNA upstream 95972 8072093 ~ 8074698 (-) True G84188
TU105031 lncRNA upstream 133530 8109651 ~ 8116827 (-) True G84184
TU105035 lncRNA upstream 133530 8109651 ~ 8116827 (-) False G84184
AMCG00021173 mRNA downstream 38773 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021169 mRNA downstream 136961 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021166 mRNA downstream 461158 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021162 mRNA downstream 473286 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021161 mRNA downstream 512045 7440032 ~ 7441027 (-) True AMCG00021161
AMCG00021176 mRNA upstream 6279 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021188 mRNA upstream 288828 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021192 mRNA upstream 385810 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021193 mRNA upstream 403868 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021191 mRNA upstream 565520 8541641 ~ 8548618 (-) True AMCG00021191
TU104623 other downstream 1406495 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3201837 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5271310 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5493693 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 5975104 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4550972 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4743743 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5651214 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5893818 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6073853 14049974 ~ 14051897 (-) True G85115

Expression Profile