RNA id: AMCG00021176


Basic Information

Item Value
RNA id AMCG00021176
length 4728
RNA type mRNA
GC content 0.56
exon number 10
gene id AMCG00021176
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 7982400 ~ 8024402 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGACCATTGACCAGCTGGTGTCCTTCCACCACATCCAGGTCCAGCTGCACGGAGGGGCGCCCTGGGGCTTCACCCTGAAAGGGGGTCTGGAGCACGGGGAGCCGCTCATCATAACAAAGGTTGAAGATGGTGGGAAGGCTGCACTGTGCAAGAAGTTGCGCGTAGGAGACGAGCTTGTGAACATCAACGGTTCGGCGCTCTACGGCTCCAGACAAGAAGCACTCATCCTTATCAAAGGCTCTTACAGGATTCTCAAGATGGTGGTTCGCAGGAGGAGCGTCCCGGTGATCAGGCCTCACTCCTGGCACCTGGCCAAGCTGTCCGAGCCCCCCGCTGACTCCCCTGCCATGCAGCTGCACTCTGGCTCCTTCAGCTTACCTTGGCAATCGGGGGGAGACACTAGTGAACTTTCCATGCAGTGGAGCCAGTTGTCTCAACACTGCAGCACAGACCGAAGCAGCTCCATTGGCAGCATGGAGAGCCTTGACCAGCCCAACCAGGGTTACTACGAGAGCCAGCTGTCTCCTGTGGACCAGGCCGTCTTTAACAACAAGAGAGACTCTGCCTACAGCTCCTTCTCAGCCAGCTCCAACACCTCGGACTACACCGTCTCTCTGAAGGCAGACGAGGCCAACTCCATGGACAGCCTGCTCCACTGCCTGGGTTCTTGTCGCCACGGTGACGGGAGGTGCCTCCACGGAGTGGGAGACGCTGGAGACTTCCCTGAAGAGGGCAAGTCCCATTCCCTGGCCAGTCATTCAGATGCCAAGATCCGGCCATCCTCTTACAGCTACGAGGAGGACAGGGTCACAGGTGCTCCCAGAGGGCCTCCCCAGCCTCCCGCTCGCAGGGACAGCTTCAAAGCCACTGGGGCCCGTCCCGGTTCCACAGACAAGCGCAGGGCCTCCGCTCCAGTCGACATGCTGAGCATCCCCAGCACCTGGGTCCAGGATTCATTGTCATCTGTACAAAGCAAGGTCTCAACCCAGGTGGGCTGTTCTTGTGATGCAGGAGGGTCCATAGACAGTAAAGGTAATGCGGCTGTAGAGCAATACTACACCCTCAGTTCGCAGCTCGAGACCTGTCATGACTGCAGCCAAGAAACAGTTAGTAAAGAGACCAACCCTGGCTCCAATTGCTCAggtcaagagagagagactcttgCCCCAAGCCCCTCACTCACCAACACTCCTGCTGTAGCTGAGGTTGAGCCATCCCCTCATAAACTGGTTTCtaagaaaaagcatttgatcacaacacacagacacagcgcACCTGAAAAGCTCTTGCCAGCACAGTTACATTGTCTTGGTCTTTCAAATACCCAAGACAGGAATTTATCTCCGGTGTATCATTTAGAAGAGCTGGAGATTCCCAGCACTGTTGATTTGCCTCCGATCAAGTGGGCTGAAAGCAGGTGTTCCACACCTGGTTCGGTGGTCAGTTCAGAAGTGGTGGAGGCCGGAGTTGAATCCAATACCCTGGATTCTCCATCTCCCATACAGCATACCTGGGGAAGGTCATTTAGTGTGCCCGAGGAGACTGTTAGCTGTTGCTCCCAGCCTGTCCTGGCAGTGGACTCTGCCATCCAGAAAGAGGCAGGTTTGGCTTCGGCCTCCAGCATGGACACACTGCTGGAGGAGGTTAGGGAGAATGAGAGCCACAAGCCCCAGGCAGCTCCCAAGCCTGGCTCTTCCCGGCAGCACCGCTCGTCCAAATCGAGGAGGCGTAGTGAGAGATTTGCCACCAACCTGCGCAATGAGATCCAGCGCAAGAAGGCGCAGCTGCAGAAAAGCAAAGGCTCCTCAAGTCTCCTCTATGGAGAGGACGTAGTGGAAGAGGTGTGTGAGCAGCCAGAGTGTGAGTCGCCATGTGAAGAAAGTCCACCCACTTCCCAGGTCTTCGACAACTTGGTAAATAAAACCTCAAACCATAATGGAGCACAGAACAACCTGCCCACCCTGGAGGGCCCTAGAAAGACAGTCTATGAGTCTGCAGACCCTTCCAGGCAGGGTGCTAAGCAAGACTTCAGCAGCAGTTGTCAAAAAATAGATGATCAGGCAGCGCAGCTGAAAGGACGGCGATGGAAGTGGACGCCAGAACACAAGCTGCAGCCTGAGGAAAGAGCAGAAGAGAAGTGCGACAGAGCTGTCACACACAAGCCCCGGACAACCAGGCCAGCCCCTGTTCCCGAGGATGGCGACATCCCCCCATTTGCCGACCGGAGGAAGTTCTTTGAGGAGACCAGCAAGAGCCTGTCCACCTCTCATCTGGCTTGCATACCTTCCAGGCGCAACAAACCTGAACCACCAGGGAAATACCAAGCAAAACCAGACCACTGCGCTAATGTGTTTGAACCAAGCCGGAGGAGGTACTCTGCTGGATTTGTCTCCCAAGAACTCAGCATCTACCATACCTCTGAGAACCGAGGTTTAGGGCAACAGGCAACACTAAACAACCGAAGGAAAAATGAATCTGATGCAGAACAGGACTTCTGTTATGGGAACAGAGTGCTCAAGCCAGTGGCACTTGAACCCCAGACCAGCTTTGCGAATGAAAACTGTAGACTGTCTCCTAACCGATGCCTGCAGAATTGTGAACACTGCATACGACCTCCAAGCTCCGCCTTTCACCCTGTGGTTTCTGCTGCCTACCAGGAATGCCCTGCCCTTTGTCCTGCTTACGATCCAAGAAGCAGGACACCAACTGAGGCGCATCCTGTGAGGGACctgcaacaaacaaaaatcaacaggAAACACAGCCTGACGGAGAGAGACTATCAGCGTTCAAGATATGACCTTCAGCCAGCAGAGGGAGATGTGCAGCAGGGCCACATTTTTCAGAGTCGCTGCAGTCAATCTCAACAGCTTGAACTCTCACCAAATCGCTTGTCTCCACCTTGCGTGGAGGAGCAGCCAGTGCCTTATCCCCAGCGAGGCCGGGCGCTGTCTGAGAGTGACATCCACCGAGACCTGCAGAGGCTGCGTCACAGGGGGGTGATTTTTGGTGGGCCGGCTCTCAGTGAGCTGGAAGAGACCGCCCCAAGGAAGAAAGGGCCACCGCCCCCCAGACCCCCTCCTCCAAAGTGGGAGCAGTACAAACAGAGGAGAGCATCCTACCACAACCTGTACTCTGCACCCCCTGTGGAGCCTCTTGCCCCACACACGCCCCCAAGCCCTGTCCATAAGGGATATCCGCGTTCTCAAAGTCCCTCTTGCCCGCGAAGTAGCCTGGAGATTTCCCGCCAGCGTTCCCATAGTTTGCCCCCGAGAGGCCTCTCTGAGAACTGCTTGCACTGCTGCCAAGAGCGACTTGTGCGCCCCCACAGCCCTGTGGCAGCACCCAAAGCTTTCACACCAGCCTGCTATTTGAAGGAGAGAAACAGGCCGTACTGTGACTCTGAACCAACCAGGTTTACAGACATGGTGCCACATGCAAACCTGCACTCAAGtTCCAGGACATGTGATTCAGAGACTCTGAGAAAAGAGGCAGAGATGGACAAAGCGGCAGTGATGAGGTCTGCTCCCCTATCTCGGAGGACAGCAGAATGGGATAGGAGCTCCGTCCCGGCTAACATGCGCAGTTTGGGGATCACTGTGGAAAATGGCACTCGGGGGCTTCCGGAGTCTTACTTTGCCATGAACTATGACCAACACAGGGATCTGCACAGGAATCTGGAGGAGCCTAGCAAGCCAGCTCAAAAGACCCTGCCGGTCCACCCCTTTAATAAGAGCCCGTTAGAGACTGACATCGATGAGTTCAAGGAAAGTGAAACGGATGAAGAGCCCGGAGAAATAGGCCAGAGAAGCCCAAGTCAGGTGACTGTTTTGGAGACCGATCTAGACATCCTTCCTGAGGGTGGCCACAACTCTCTGGTGGATGTCCTGTGTCCTGATTTGGGGTTGAAGACCAGAACTGACCTCATGGGGGAGCTGTTTCCTCAGACTGGAGAGGAGAGTGGGCTGCGGGAGCAGTGGAGGAGTGGACGCAGTCTGCTGGAGCTCAGTGTGGACACTCTGGAGAGGCGCTCCAGGCAGGGCTCCTCCAGCACTCAAGGCCCAGGCTCGTCCTGCTCGGCCTACTACAGCACCTCTGCTGCCAAGGCCCAGCTGCTCAGCAAGATGAAGGAGCTACCGGGGAtgagtgaggaagaggaggaggatgaacTCTTATACAAGAAGAGACAGCTGATTGAAAGTCTGCGCAAGAAGCTCTCCGTACTCCATGATGCACAGAAGGACCTGCAGGAAGACATCGGTGCCAACGGGGCTCTGGGGGAGGAAGTGGAGACGCTGGTGCAGGCCGTGTGCAAGCCCAATGAGGTGGACAAATTCCGCATGTTCATCGGAGACCTGGACAAGGTGGTCAGTCTGCTGCTGTCTCTGTCCAGCCGCTTGGTCAGGGTGGAGAGTGCTCTGGACAGCCTGAGCCCTGATGCCAGCCACCATGAGAGGCTCACCCTGACGGAGAAGAAGAAGCTGCTCCTGGGACAGCTGGGTGAGGCTCAGGAGCTGAAGGAGCACGTAGACCGGCGCGAGCAGGCGGTGTGCCAGGTGCTGGCACGGTGCCTCACCCCAGAGCAGCTGCGTGACTATAGCCACTTTGTCAAGATGAAGGCCGCACTTCTAGTGGAGCAACGCCAACTGGAAGACAAGATCCGCCTGGGCGAGGAGCAGCTCAAGGGCCTGAGAGAGAGCCTGGGTATGGGCTATGGGCACTACTGA

Function

GO: NA

KEGG:

id description
K18625 SHROOM; protein Shroom

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104989 lncRNA downstream 2577 7978250 ~ 7979823 (-) True G84156
TU104961 lncRNA downstream 50884 7924021 ~ 7931516 (-) True G84132
TU104925 lncRNA downstream 176863 7801129 ~ 7805537 (-) True G84108
TU104908 lncRNA downstream 338400 7559855 ~ 7644000 (-) True G84093
TU104906 lncRNA downstream 422280 7553620 ~ 7560120 (-) False G84093
TU105033 lncRNA upstream 40129 8064531 ~ 8116827 (-) False G84184
TU105039 lncRNA upstream 47691 8072093 ~ 8074698 (-) True G84188
TU105031 lncRNA upstream 85249 8109651 ~ 8116827 (-) True G84184
TU105035 lncRNA upstream 85249 8109651 ~ 8116827 (-) False G84184
TU105055 lncRNA upstream 177357 8201759 ~ 8207550 (-) True G84203
AMCG00021175 mRNA downstream 6279 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021173 mRNA downstream 68101 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021169 mRNA downstream 166289 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021166 mRNA downstream 490486 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021162 mRNA downstream 502614 7469757 ~ 7479786 (-) True AMCG00021162
AMCG00021188 mRNA upstream 240547 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021192 mRNA upstream 337529 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021193 mRNA upstream 355587 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021191 mRNA upstream 517239 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021209 mRNA upstream 533830 8558232 ~ 8580015 (-) True AMCG00021209
TU104623 other downstream 1435823 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3231165 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5300638 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5523021 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6004432 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4502691 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4695462 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5602933 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5845537 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 6025572 14049974 ~ 14051897 (-) True G85115

Expression Profile