RNA id: AMCG00021180


Basic Information

Item Value
RNA id AMCG00021180
length 2072
RNA type mRNA
GC content 0.35
exon number 3
gene id AMCG00021180
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8040170 ~ 8043299 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCACCGCAGGGCAGAAAAAGCAGGGCTAGGAGGGACAGAGGAGCAGATTAAAGAGGAGCCTCCTTGAACTTGTGGAATACAGGAGAAGAGCAAGACCCTCTGTTCGAGCTACAACTGAGATCATCTCCGAAGACATCTGTCCACCTTTATTGAGATGCAACTGTGCAGCAGGTCAACGGCGGTGGCATGCATTGTGGTGCTAATGCTCATCTGTcagATCTCCAGCGGTCTGGTTCCAAAGAGCAGTACTGTTATCGACAAGCCTTTGAGTCGGAGAGCTCGTAATACCCCTCTGTGGAGAATAATGGGCACCAAGCCGAATGGGGCCTACTGCCAAGAAAACTTTGAATGTGCCACCAACATCTGCAGAAAGGGCCATTGTTCCATCAACCAGCAGTTTAAATCCTAACAGAAAGGAGACCAGACACCTTCTATAAGTAAAGAGCACCAACACCACCCAAAACTGGATCATTTATGTTATATGCAGGCACTTTGCAGCTgtcaaatgtgtaaatgtacagCTGTCAGACACAAAAACCTTTCCGTTTGACCCCCAGACTCAAGTTTCAATATGTAACTTTTCGTACATGCAAGCTACTAACTGTTATTACAATGATTGCTTTGTAgccttttgcttttattttagtaGAGCATTCTGTCAGAATTGCAGACCTGAAGGACAGACCTGATCACTGACAGGTTGAGACCAGCAACCTCAGAGATTTGATATGAAGTctgttttattgtgatttagtTTATAGAATTTATAATCTGATATCCATATTGCAGTAAATTTTGTTTAATCCTGTGCAGTCctgtaaaaatgtaagaatatCTAATGGTAggatttttcatttgaattgttaattttaaaataatttttcaaaaataatgtttaatttggcGTGGAAATTAAGGTGTAACTCAGTCCCAAAGACATCGGTGCTCCTTACATTGTGTTGATTGGGAATgaaatttgaattttttgaatatttttttaaacttacttCTACAAATATTTGAAGGCTGTTATCTGTCTTTAATAACTTTCTCTAACTTATACATTTGAGCCCATTTGTTTTGTACCTTGTTGACATTAGAGGAATTTTCTTTGCcattttgctctctctctcaatctctcagatttttccttctttaaataacatttaaattagtcCAGAAAGCAAAgtatacattcaaaatgaaaatacatatctCATTTGGGTTTGGTTGGtataagtatttaaatgtttaactaaaCATCTCTAGGAGCTGAAGAAATGTAAGCATGAAGTTCTTGAGGTTATATGCAaggtacatatttattttatatatgaacaAGATACTGTATTGACTATCCATATGATATTATATTGTCAGCTGGATACATTGTAGTACTTTTGTCCCTTTAGCTTTTTATTTGCTCCAGTTTGGAGGATGGAAGAAAGTTAACCTCTCATTTGAATGAATAAAAAGTGGTACATTTTTTttgatgacatttaaaaatagaaaatgttatcAGATCATGTGGGGTTTTGCTATTTGCTATTTTTGTTCAAAAGTCTTGTTTCAACCTTACAGAGCAGACACAAGGTTTGGTCATCTGTATTTATATGAAATGCAATTCCATTTTGCACATTGTCATATTGTATAATACTATTGTGAACCgatatatatgaataacaaGTATCAATATGTTCTTATACATgagtgatatatttattttatgtgaaatgtgtatgtattgtaataaGCCACACCTGTAACAATTTCCTTCGTTTGTACTGTGACTTCTCTCTCAGATATTTTGATGCCCACAGATTGAGAAGAGATGTGTGAAAAGCtacatttgcaatattttttcaaaaattaaAGTGCTTTAACTGATACCTTTAGTGGGATTTATTTCCGGAAGAGTGGAGTTACAGTGAGCAAAGTCTACTAgtcaattattaaatgtatgctttttttgAATAAAAGTTATGTGACTTACATATGTTGCAATGGGGGCAGATAAGGGAAATATCTGCATTTGTTGGACAAGATTACTCCTActtaaaattagaaaatg

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU104988 lncRNA upstream 60344 7978217 ~ 7979826 (+) True G84155
TU104910 lncRNA upstream 339487 7657193 ~ 7700683 (+) True G84095
TU104903 lncRNA upstream 480050 7553620 ~ 7560120 (+) True G84090
TU104888 lncRNA upstream 528182 7511369 ~ 7511988 (+) True G84078
TU104868 lncRNA upstream 613823 7425931 ~ 7426347 (+) True G84061
TU105048 lncRNA downstream 158539 8201838 ~ 8207378 (+) True G84196
TU105099 lncRNA downstream 332032 8375331 ~ 8376038 (+) True G84244
TU105139 lncRNA downstream 512662 8555961 ~ 8558418 (+) True G84276
TU105163 lncRNA downstream 544299 8587598 ~ 8588963 (+) True G84298
TU105326 lncRNA downstream 1376757 9420056 ~ 9423419 (+) False G84425
AMCG00021174 mRNA upstream 4812 8032005 ~ 8035358 (+) True AMCG00021174
AMCG00021171 mRNA upstream 90584 7934355 ~ 7949586 (+) True AMCG00021171
AMCG00021170 mRNA upstream 108654 7925183 ~ 7931516 (+) True AMCG00021170
AMCG00021172 mRNA upstream 134136 7872156 ~ 7906034 (+) True AMCG00021172
AMCG00021168 mRNA upstream 238897 7786997 ~ 7801273 (+) True AMCG00021168
AMCG00021179 mRNA downstream 5532 8048831 ~ 8074602 (+) True AMCG00021179
AMCG00021181 mRNA downstream 31968 8075267 ~ 8091708 (+) True AMCG00021181
AMCG00021177 mRNA downstream 62109 8105408 ~ 8105869 (+) True AMCG00021177
AMCG00021178 mRNA downstream 68716 8112015 ~ 8116824 (+) True AMCG00021178
AMCG00021184 mRNA downstream 77346 8120645 ~ 8121931 (+) True AMCG00021184
TU104813 other upstream 918933 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 918933 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3806414 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 3910954 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4241387 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 588428 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1372968 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2919849 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 4032046 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 8020301 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile