Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00021181 |
| length | 1394 |
| RNA type | mRNA |
| GC content | 0.51 |
| exon number | 11 |
| gene id | AMCG00021181 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030130.1 |
| NCBI id | CM030130.1 |
| chromosome length | 39556810 |
| location | 8075267 ~ 8091708 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0070932 | histone H3 deacetylation | biological_process |
| GO:0070933 | histone H4 deacetylation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0032041 | NAD-dependent histone deacetylase activity (H3-K14 specific) | molecular_function |
| GO:0097372 | NAD-dependent histone deacetylase activity (H3-K18 specific) | molecular_function |
| GO:0046969 | NAD-dependent histone deacetylase activity (H3-K9 specific) | molecular_function |
| GO:0046970 | NAD-dependent histone deacetylase activity (H4-K16 specific) | molecular_function |
| id | description |
|---|---|
| K11405 | HDAC8; histone deacetylase 8 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU105006 | lncRNA | upstream | 32098 | 8040224 ~ 8043169 (+) | False | AMCG00021180 |
| TU104988 | lncRNA | upstream | 95441 | 7978217 ~ 7979826 (+) | True | G84155 |
| TU104910 | lncRNA | upstream | 374584 | 7657193 ~ 7700683 (+) | True | G84095 |
| TU104903 | lncRNA | upstream | 515147 | 7553620 ~ 7560120 (+) | True | G84090 |
| TU104888 | lncRNA | upstream | 563279 | 7511369 ~ 7511988 (+) | True | G84078 |
| TU105048 | lncRNA | downstream | 110130 | 8201838 ~ 8207378 (+) | True | G84196 |
| TU105099 | lncRNA | downstream | 283623 | 8375331 ~ 8376038 (+) | True | G84244 |
| TU105139 | lncRNA | downstream | 464253 | 8555961 ~ 8558418 (+) | True | G84276 |
| TU105163 | lncRNA | downstream | 495890 | 8587598 ~ 8588963 (+) | True | G84298 |
| TU105326 | lncRNA | downstream | 1328348 | 9420056 ~ 9423419 (+) | False | G84425 |
| AMCG00021179 | mRNA | upstream | 665 | 8048831 ~ 8074602 (+) | True | AMCG00021179 |
| AMCG00021180 | mRNA | upstream | 31968 | 8040170 ~ 8043299 (+) | True | AMCG00021180 |
| AMCG00021174 | mRNA | upstream | 39909 | 8032005 ~ 8035358 (+) | True | AMCG00021174 |
| AMCG00021171 | mRNA | upstream | 125681 | 7934355 ~ 7949586 (+) | True | AMCG00021171 |
| AMCG00021170 | mRNA | upstream | 143751 | 7925183 ~ 7931516 (+) | True | AMCG00021170 |
| AMCG00021177 | mRNA | downstream | 13700 | 8105408 ~ 8105869 (+) | True | AMCG00021177 |
| AMCG00021178 | mRNA | downstream | 20307 | 8112015 ~ 8116824 (+) | True | AMCG00021178 |
| AMCG00021184 | mRNA | downstream | 28937 | 8120645 ~ 8121931 (+) | True | AMCG00021184 |
| AMCG00021182 | mRNA | downstream | 96106 | 8187814 ~ 8201634 (+) | True | AMCG00021182 |
| AMCG00021183 | mRNA | downstream | 138691 | 8230399 ~ 8250083 (+) | True | AMCG00021183 |
| TU104813 | other | upstream | 954030 | 7115381 ~ 7121237 (+) | False | AMCG00021150 |
| TU104814 | other | upstream | 954030 | 7115381 ~ 7121237 (+) | False | AMCG00021150 |
| TU104395 | other | upstream | 3841511 | 4230972 ~ 4233756 (+) | False | AMCG00021114 |
| TU104390 | other | upstream | 3946051 | 4127271 ~ 4129216 (+) | False | AMCG00021113 |
| TU104336 | other | upstream | 4276484 | 3797841 ~ 3798783 (+) | True | G83624 |
| TU105166 | other | downstream | 540019 | 8631727 ~ 8633410 (+) | True | G84301 |
| TU105325 | other | downstream | 1324559 | 9416267 ~ 9423419 (+) | True | G84425 |
| TU105614 | other | downstream | 2871440 | 10963148 ~ 10987174 (+) | True | G84657 |
| TU105723 | other | downstream | 3983637 | 12075345 ~ 12100707 (+) | True | G84749 |
| TU106850 | other | downstream | 7971892 | 16063600 ~ 16073618 (+) | False | AMCG00021373 |
