RNA id: AMCG00021183


Basic Information

Item Value
RNA id AMCG00021183
length 3060
RNA type mRNA
GC content 0.48
exon number 12
gene id AMCG00021183
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8230399 ~ 8250083 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGTTGGGATGCATTAAAGTAACTGTTGTTTTGTGCAATTTCTTGTCAAAGATCGGACGCGAGATGGAAGGATAGGAGGGAAAGGGAAGGTTTTGCGGCAGCCCCACGCGTCTAGTATCCAATACACAAATGGGCTCTTTCCTGGCTCAGAGGCAGTGGGGAGCATGCATGCATCAGTTCAGATGAAGAAGAATTTAAAGGGTGAACATAGGTGGACTACCATGTTTGGACAGAGTGTCAAACTGCTGCCGGTTCCTATTCAGAGTCTTTCTGAGCTGGAGAGGGCTAGGCTACAGGAAGTGGCTTTCTACCATCTGGAAGAACGAGAGCTGGATTGCAAGATTAGCATTCCCAAAGAAACTCCAAAAAGGAGGAAATCACTGCGAAGGAAGTTTGACTCCTTTTCcaaagagagaaaggaaagagAGACTGCTCCGAAGGCCTTTGGGATCCCTCTTTCCCATGTGATCGCGAATGACAGAGCCCACAAACAGAAGCAGGACGCCCTCAAGGAGAGCCGCAGGGACTGCCTGGACCTGGAGGCCAGCGTGCTGCGATTCCGGGCcgagaaacaaaacaagcccCCCAACTCCGACCCCCGCACCACACTTGACCTGCACAACAAGCATCTCTCCCCCACTTTCCTGGACAACACATCCAGAAGCCATCGCAGGGGAGGGCTGTCAGTGGATTCCATCTCAGACCTGGTTGACAGTCAGTCACGTTTATTGGAGGCCCTGCAGCTCTCCCATCCGAATGAACTGGAGAGCAAGAGGGTAACTGGGCGGCCAAAGAAACTCAGCCTGAATCCCATCTACAGGCAGGTGCCCAGGATTGTTGACCGCTGCTGTCAACACATCGAGATTTATGGTTTGCATACTGTAGGGATTTTCCGAGTTGGGAGTTCAAAGAAGAGGCTGCGTGAGGAGTTTGACCTGGGCAATGATGTCATTCTGGATGATGACCACAGTGTCCACGATGTGGCGGCTCTCCTGAAGGAGTTCCTGAGGGACATGCCTGATCCCCTGCTGCCCAGAGAGCTTTACTCAGCCTTTCTTCACGCTAATGCATTGAAGGGGCCCGACCGACTCCTGTTCCTGCAGCAGCTGGTGTATCTGCTGCCGCCATGCAACTGTGACACCCTGCAGCGgctcctgcagctcctccacaCGGTGCATAGCCATGCCCAGGACACCACGGGCCCTGACGGACAGGAGATTTCTGGGAACAAGATGACAGCCGCTAACCTGGCAGTCATTTTTGGACCCAACCTCCTTCAAGGGGAGAAAGCCACAGAGAAGGACTATAGCCAGCAGTCAGTGGGAATAGAGGACAGCTCCTCCATCATCTCAGTCACACTAGAACTATTACAGAACTACAAATCCTTGTTTACAGTGTCTGCTGAGCTGCAACAGGAGGTCCTTATGAGTTTACTGCAGACTGATTCAGATTCTTCCTATGATTCCTCCACGCTGTCTAGTGGGGATATTTCCCCCCTGGATGCCTCTCCCATCTTCTCTGAGCAGCAGGGCGCTGGCAGCCTGAGCAGTGATATCTTCCTCAACCTCCTCAGACTCAACAAGCACAGGAATCGTTCTTCTGAAGACAGCCCTAGAAAACCGATGAACCAGACAAGGCAGTTTTACTCGCACCACAACCTTATGAGTCTGACCCAGTCTCCCTGCGGAAGACAGTCAGAAGAAAGAGATCCTGTTGAACAGGAGAAGACCGTCTTCCATGCCAAGAACAATGGCCAATCCTCTCAGGAAAGCCCCTCTCAAAGCGATGCCCAGACAGTAAAGCCGGGCAGGGGAGGGGAGTCACCTCAGAAGCTGATGGGTCTCTCGGAGAGGAACGAGACTCCAGACATCCAGACTCTTGTAGACTACCCACAACGCCTCTTCAGCTCGGGGCAAAACCCCAATGCCAACAGCAATAACAACACAAACCCTGGCCCCACAGCCCAAATGAATCAGCCACCTTCTCCAGGAGACGGTGTATGGGTGAAACAGGACACTGCAGATACAGTTGAGAGCAGGCCTCAGAGCAGCCCCACAAATTTCTGGGACTTTTTCACAGGAAAAATCTCTGGTTCAGAAACAATCGTATGACCAGTAAGGCTGGTCCCACAATGGTAGCATTCTAGACTAAGACCTGGACATGACCAGATTTAAATCACTGCTGTGGTGTTTTCTGAGACTGTACAGAACAAACAACAGGCATGGTtcaccatttcagaatgtgttcTTCTGTCAAGATGCGagtttttgtaattttccatcagcttgtgttgttttctgtgcagCCTTGCAGACGTGCAACAATCTGCCGAACGACTGACAAAGTGTTGGCAAAAAAGTGAAACTGAAGattatgttttctgttctttggTGCACTACATCCctcacattttttgttcttgccCTTCTGCTCATAAACATTGGGCCCCTGCAAACAAATTTGACACAAGTTCTCCTTTGAAGTTGTTCACAGTTGTCCCTGCCTTAGACATGTATGATATTGCCATATACTGTAGATATAGATACCTATCTATGCATTTTTATGTATCAtaattttcatcatcatcatcctttGTTGATTCCCTGCTGGATTAAGGTCTGCCCAAGATGCTTCCCAATTGTTTTTATCTAAATCCTCTATTTTCCAGGTTAGACCACAAAGGTTAAAtattcccatcttctatgtggtcttcATCTTGGTTATTTTTCACCTCTTGGGTCCAATACTATAGTCCTTTATTCCATCTCTGATattttcttgcagtgtgtccgcctcattgccattttaacatcttcactctttATATGCATAATGCAAACTTATTATTTTGCCAGTTACAGATATTGACATCAGGAAAAAGCACCTAAAAGCACTAAATGTCAGAAGAAACTGATGCCTCCTTCATAAGCTATGGTACTTATTTTCTTGTAACAGACTTGTATGTATTCATTGCACAAGAGAAATGTCTTCACAAATTGTTCATGATCAAAACCTTTATAAAGctatactttatttaataaagccaGAACAGTGTCCCTGC

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component

KEGG:

id description
K20631 ARHGAP6; Rho GTPase-activating protein 6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105048 lncRNA upstream 23021 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 187230 8040224 ~ 8043169 (+) False AMCG00021180
TU104988 lncRNA upstream 250573 7978217 ~ 7979826 (+) True G84155
TU104910 lncRNA upstream 529716 7657193 ~ 7700683 (+) True G84095
TU104903 lncRNA upstream 670279 7553620 ~ 7560120 (+) True G84090
TU105099 lncRNA downstream 125248 8375331 ~ 8376038 (+) True G84244
TU105139 lncRNA downstream 305878 8555961 ~ 8558418 (+) True G84276
TU105163 lncRNA downstream 337515 8587598 ~ 8588963 (+) True G84298
TU105326 lncRNA downstream 1169973 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 1614603 9864686 ~ 9878867 (+) False G84477
AMCG00021182 mRNA upstream 28765 8187814 ~ 8201634 (+) True AMCG00021182
AMCG00021184 mRNA upstream 108468 8120645 ~ 8121931 (+) True AMCG00021184
AMCG00021178 mRNA upstream 113575 8112015 ~ 8116824 (+) True AMCG00021178
AMCG00021177 mRNA upstream 124530 8105408 ~ 8105869 (+) True AMCG00021177
AMCG00021181 mRNA upstream 138691 8075267 ~ 8091708 (+) True AMCG00021181
AMCG00021185 mRNA downstream 25973 8276056 ~ 8283292 (+) True AMCG00021185
AMCG00021187 mRNA downstream 49939 8300022 ~ 8313425 (+) True AMCG00021187
AMCG00021186 mRNA downstream 81230 8331313 ~ 8334759 (+) True AMCG00021186
AMCG00021190 mRNA downstream 252413 8502496 ~ 8540649 (+) True AMCG00021190
AMCG00021189 mRNA downstream 298971 8549054 ~ 8555160 (+) True AMCG00021189
TU104813 other upstream 1109162 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 1109162 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 3996643 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 4101183 4127271 ~ 4129216 (+) False AMCG00021113
TU104336 other upstream 4431616 3797841 ~ 3798783 (+) True G83624
TU105166 other downstream 381644 8631727 ~ 8633410 (+) True G84301
TU105325 other downstream 1166184 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2713065 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 3825262 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 7813517 16063600 ~ 16073618 (+) False AMCG00021373

Expression Profile