RNA id: AMCG00021188


Basic Information

Item Value
RNA id AMCG00021188
length 1461
RNA type mRNA
GC content 0.52
exon number 9
gene id AMCG00021188
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8264949 ~ 8275630 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTAACAGTGTTATACAGTAATAGCAGTGCTTATGGTTTCACCACAGTGAAGATGACCTGCTCCTCATGCTGCACACCCAGTCAGGTGGAGTGGAGACCAGACTTGGGAAAGTCACAGTGCCTGCGTGTGCGCGGAGCCTCGTTTTCATTCCAACATGGCCGCCCTTATGGGAAGGGCCTATTAACCACTGCAGGCTGCGTCGGACGCATATCCCAGCGACACTCCCTCTTTGTGACCGTGGGCTCGGCTGGACCAGCTTCCCCGGAACTCCGGCCGCTGCGGCTGTCAATTCAGTGTATGGTTCGGTCCAATATGGCGGCAGACGGATGGAAATACTGATGACAGTCCGAAAGATCGCCTCGATTTGTACGATGGGCGCCAATGCCTCAGCTTTGGAGAAAGAGATTGGACCGGAACAGTTTCCCGTGAATGAACACTACTTCGGCTTGGTCAACTTTGGAAACACTTGCTACTGCAACTCCGTCTTGCAAGCACTTTACTTCTGCCGGCCTTTTCGGGAAAAAGTTCTGGCATATAAGATCCAGCCAAGGAAGAAGGAGAGTCTGCTGACCTGCCTGTCGGACCTCTTTAATAGCATCGCCACCCAGAAGAAGAAGGTGGGAGTCATCCCGCCGAAGAAGTTCATCTCCCGGCTCAGGAAAGAAAACGAGCTCTTTGACAACTATATGCAACAGGATGCGCATGAGTTCCTGAACTACCTGCTCAACACCATTGCTGACCTCCTGCAGGAGGAGATGAACCAGGAGAAGCAGAATGGCAAACTGCAGAACGGCTGTGTGGAGAGCGAGGAGGCGGACAAGACCGAGGAGACCTGGGTCCACGAGATCTTCCAGGGCACGCTCACCAACGAGACTCGCTGTCTCAACTGCGAAGCGGTCAGCAGCAAAGATGAGGACTTTTTGGATCTCTCGGTAGATGTGGAACAAAACACTTCAATAACCCATTGCTTGAGGGGCTTCAGCAACACTGAGACCCTATGCAGCGAGTACAAGTACTACTGTGAACAGTGTCGGAGTAAACAGGAAGCACAGAAGaggATGAGGGTAAAGAAGTTGCCCATGATTCTGGCTCTGCACTTGAAGAGGTTTAAGTACATGGATCAGCTCCACCGATACACTAAGCTCTCCTATCGCGTTGTTTTCCCGCTGGAGCTGCGACTGTTCAACACATCTGGAGACGCCACCAACCCTGACCGAATGTATGACCTGGTGGCTGTCGTGGTGCACTGTGGCAGGGAAGTTAAACTTTCAGATTTTGTCACATCTGGTGTGTGTTTTCCCTTCGTGTGGGAAAAGCTCAAGAGGAAAATAGACGCCCAAGCAATAGAGGAATTTTACGGTCTAACATCTGACATTTCCAAGAACTCTGAGTCGGGATACATCCTCTTCTATCAGTCAAGAGACTGAGCTGAAGCGACGAGCTGTGGTCATCActgggcg

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105055 lncRNA downstream 57399 8201759 ~ 8207550 (-) True G84203
TU105033 lncRNA downstream 148122 8064531 ~ 8116827 (-) False G84184
TU105031 lncRNA downstream 148122 8109651 ~ 8116827 (-) True G84184
TU105035 lncRNA downstream 148122 8109651 ~ 8116827 (-) False G84184
TU105039 lncRNA downstream 190251 8072093 ~ 8074698 (-) True G84188
TU105170 lncRNA upstream 311939 8587569 ~ 8589053 (-) True G84304
TU105171 lncRNA upstream 313590 8589220 ~ 8590488 (-) True G84305
TU105173 lncRNA upstream 425949 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 465531 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 560645 8836275 ~ 8840659 (-) False G84332
AMCG00021176 mRNA downstream 240547 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021175 mRNA downstream 288828 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021173 mRNA downstream 350650 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021169 mRNA downstream 448838 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021166 mRNA downstream 773035 7482573 ~ 7491914 (-) True AMCG00021166
AMCG00021192 mRNA upstream 86301 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021193 mRNA upstream 104359 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021191 mRNA upstream 266011 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021209 mRNA upstream 282602 8558232 ~ 8580015 (-) True AMCG00021209
AMCG00021208 mRNA upstream 315394 8591024 ~ 8603676 (-) True AMCG00021208
TU104623 other downstream 1718372 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3513714 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5583187 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5805570 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6286981 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4251463 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4444234 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5351705 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5594309 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5774344 14049974 ~ 14051897 (-) True G85115

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00034425 True 1417 mRNA 0.48 9 NC_007131.7 23083800 ~ 23111727 (+)
grasscarp (Ctenopharyngodon idella) CI01000345_01001393_01009012.mRNA True 1311 mRNA 0.49 8 CI01000345 1001393 ~ 1009012 (+)