RNA id: AMCG00021191


Basic Information

Item Value
RNA id AMCG00021191
length 1718
RNA type mRNA
GC content 0.46
exon number 12
gene id AMCG00021191
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8541641 ~ 8548618 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGAAATGTGTTGGTTCAGAACTACAATCCCCACCAACCAACGCCTCGTATTTTTATTCACTGCCTTTTAAACCCCGATGACAGCCGGAGGATGGAGGCAGTTTTAGCTAAGTATGAAAATCAGATCAACGTGTTCTCAGACCTTCTAGAAGACCTGCCTGATACGGAAGAGCCTGTATGGATTTTAGGAGAACATTATGACATCAAAACAGGTGGGACTGGTCCTTCCTCAGATGCCGGATGGGGGTGCATGCTGCGTTGTGGACAGATGATTCTAGCTCAAGCATTGGTGTTAAGGCATTTAGGCAGAGCGTGGCGCTGGGGGAAGGATGAAATCCCCCCAGAAGAGTACATGAAGATTCTGCACTGCTTCTTGGATAGAAAAGATAGCTGCTACTCCATCCACCAGATGGCTCAGATGGGAGTGGGAGAAGGCAAATCAGTGGGAGAGTGGTATGGACCAAACACTGTCGCTCAGGTGTTAAAgaAACTTGCCTTGTTTGACGACTGGAATTCCTTGGCTGTATATGTTTCTATGGACAACACTGTGGTTATTGAAGATATCAAAATGCTTTGCAAGCTCTCCAGTAGAAACCGTTTAAAGGCTAGCCCCTGTGGTCCCAGTGACCAAAAAGGCATTGGAGAAGCACTGGCACAGTGTGCCACCCAGTCACCAGGGGGTAGTCTGGGGTTGTGTCCACACCCCCCTTCCAGCTGGAAACCACTCCTGCTCATCATACCTCTGCGAATGGGAATAAACCACATCAACCCTGTTTACATCAAGGCCTTGAAGGAGTGCTTTAAGATGCCACAGTCCTTAGGCGTTTTAGGAGGAAAACCTAACCTTGCGTATTACTTTATCGGCTACATTGGAGACGAGCTGATCTATTTGGACCCTCACACCACTCAGACAGTGGTGGAGCCAGAAGGGAACGGCAGTGTGGATGACCAGAGTTACCACTGCCAGAGAACCCCCCGCAGGATGAAAGTCATGAACCTTGACCCCTCTGTGGCATTGGGATTTTTCTGCAAGAACGAAGTGGACTTTGACAGCTGGTGTACACTCGTTCAGCAGGAGATTTTAAAGAAGAGAACTTTACGGATGTTCGAGTTGGTGGAGAAACACCCTCCTCATTGGCCTCCTTTTGTTCCTCCCACCAAACCAGATGTCCAGACAACAGGAGCAGAGTTCATCGAATCAACCGATAAGCTGTTTGAATCGGAAGAAGAGTTTGAAATTCTCAACGTATGAATTGTTTTACCAGCAACTTGATGACATCTGGGTTTCCAAGTCTTTCCACTCTAGAAGTGCCTCAGATCACTCTTTACACAAAGCACAATGTGTAACCAGTTTGCAAAAAAAGTATGAGGGGAAAAGTAAGAGGCGAAAGGACTTCAAGAAGGTGGAAGAAAGCTTGCACTGTGTATTTTAGTTTCTCTCTGCTGTTTTACGAGAGAAAACCAGTATCATGCTGGCCCCCATAGAGAACAGTCTATGCAGACAGCCTATGTGAAGACTGGTTATGAAAAGGGCATGTTTTGAAGGAGTTCTCAGTGCATGAATCACAATGTAAGTCTCCTATAAAATGTAAGAGGTCTACACACTGTGGAAGCAGATGGGAACCATATCTCCAAGTACCATCGACAGACTCTACCTCCTgaaaatggagaaaataaatatgcagacAATTTAAGagttaagtaaaaaaaaaaaaaaa

Function

GO: NA

KEGG:

id description
K08342 ATG4; cysteine protease ATG4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105055 lncRNA downstream 334091 8201759 ~ 8207550 (-) True G84203
TU105033 lncRNA downstream 424814 8064531 ~ 8116827 (-) False G84184
TU105170 lncRNA upstream 38951 8587569 ~ 8589053 (-) True G84304
TU105171 lncRNA upstream 40602 8589220 ~ 8590488 (-) True G84305
TU105173 lncRNA upstream 152961 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 192543 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 287657 8836275 ~ 8840659 (-) False G84332
AMCG00021193 mRNA downstream 25719 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021192 mRNA downstream 168899 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021188 mRNA downstream 266011 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021176 mRNA downstream 517239 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021175 mRNA downstream 565520 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021209 mRNA upstream 9614 8558232 ~ 8580015 (-) True AMCG00021209
AMCG00021208 mRNA upstream 42406 8591024 ~ 8603676 (-) True AMCG00021208
AMCG00021202 mRNA upstream 83054 8631672 ~ 8636891 (-) True AMCG00021202
AMCG00021201 mRNA upstream 213085 8761703 ~ 8763622 (-) True AMCG00021201
AMCG00021204 mRNA upstream 220715 8769333 ~ 8774394 (-) True AMCG00021204
TU104623 other downstream 1995064 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3790406 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5859879 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 6082262 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6563673 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 3978475 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4171246 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5078717 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5321321 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5501356 14049974 ~ 14051897 (-) True G85115

Expression Profile