RNA id: AMCG00021192


Basic Information

Item Value
RNA id AMCG00021192
length 1335
RNA type mRNA
GC content 0.60
exon number 11
gene id AMCG00021192
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8361931 ~ 8372742 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGTCTCCGGGCAATCCAGGCCTCCCTGGCCCTCCTGGACGTCCAGGAGATCCAGGCCGCTCTGGACAGTCAGGTCAGCCAGGCATTGGCCGCCCAGGTTCCCCCGGCCTCCCAGGATTACCAGGGTCAAAGGGTGACAGTGGATTGCCTGGTCTTCCTGGTAGCCCTGGCTTTCCTGGTACAAAGGGTGAGGCTGGTTTCCCGGGAATGCCAGGGTCTCCTGGAAGTAGTGGACCTCCAGGCCCCCCTGGCTTGCCTCAGCAAGGTCCCAAAGGTAACCCGGGGTCCCCAGGCCCCCCAGGAAGAAGCGGGTATTCCTGGGACTCCAGGACCCAGTGGCTTGAAAGGAGATGTTGGATTCCCCGGTGTACCAGGATTCCCAGGTCAGCCTGGACTTCCTGCAGTTTCTCCTGCACCTATTGTAGTGAAAGGGGAGCCAGGTTCCCCGGGACCACCAGGAATACAAGGGCCCCGTGGACCCCCAGGACGACCGGGATTGGATGGCCTCCCAGCGGATTGTAACAATGTGCTGAATCTCTTCCAGGTTCGCCAGGTTCGTCTGGAGACCCAGGACCTGAAGGTGCCCCTGGATTCGGTGGTTCTCCAGGGCGCAAAGGTGACACGGGCCCAGCTGGACAACCTGGTCAGCGAGGTTACCCTGGCCCTCCGGGACCTGAAGGACAGCAGGGACCCCCTGGCCCTACATCCTCTGGCTCAGTGGCCCATGGCTTCCTCATCACTCGACACAGCCAAACCATTGAAGTCCCGCTCTGCCCTTCTGGCACGGACTGCTGGGAGCTGCCTACGCCGTTTCAGCACCATGCCCTTCATGTTCTGCAACATCAACAACGTCTGCAACTTCGCCTCCAGAAACGACTATTCCTATTGGCTGTCCACCCCTCAGCCCATGCCAATGAGCATGGCCCCAGTGACAGGAGAGGGGATCAAGCCATTCATCAGCAGGTGTTCAGTGTGTGAAGCTCCAGCAATGGTCATCGCTGTCCACAGTCAGACCATCCAGCTGCCCAGTTGCCCCGTGGAGTGGGAACCCCTGTGGATCGGATACTCCTTCATGATGCACACGAGTGCGGGTGCGGAGGGCTCGGGCCAGGCCTTGGCATCGCCGGGATCCTGTCTGGAGGAGTTCCGCTCGGCTCCCTTCATTGAGTGCCACGGCAAGGGCACTTGCAACTACTACGGCAACTCCTACAGCTTCTGGCTCGCTACTGTCGATATGTCAGAAATGTTCAGTCGGCCCCAGTCAGAGACGCTGAAAGCAGGGAACCTGCGGACGCGCGTGAGCCGCTGTGTGGTGTGCATGAAGAGGACGTAA

Function

GO:

id name namespace
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:0030198 extracellular matrix organization biological_process
GO:0007412 axon target recognition biological_process
GO:0005581 collagen trimer cellular_component
GO:0005201 extracellular matrix structural constituent molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105055 lncRNA downstream 154381 8201759 ~ 8207550 (-) True G84203
TU105033 lncRNA downstream 245104 8064531 ~ 8116827 (-) False G84184
TU105170 lncRNA upstream 214827 8587569 ~ 8589053 (-) True G84304
TU105171 lncRNA upstream 216478 8589220 ~ 8590488 (-) True G84305
TU105173 lncRNA upstream 328837 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 368419 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 463533 8836275 ~ 8840659 (-) False G84332
AMCG00021188 mRNA downstream 86301 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021176 mRNA downstream 337529 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021175 mRNA downstream 385810 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021173 mRNA downstream 447632 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021169 mRNA downstream 545820 7815128 ~ 7816111 (-) True AMCG00021169
AMCG00021193 mRNA upstream 7247 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021191 mRNA upstream 168899 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021209 mRNA upstream 185490 8558232 ~ 8580015 (-) True AMCG00021209
AMCG00021208 mRNA upstream 218282 8591024 ~ 8603676 (-) True AMCG00021208
AMCG00021202 mRNA upstream 258930 8631672 ~ 8636891 (-) True AMCG00021202
TU104623 other downstream 1815354 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3610696 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5680169 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5902552 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6383963 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4154351 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4347122 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5254593 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5497197 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5677232 14049974 ~ 14051897 (-) True G85115

Expression Profile