RNA id: AMCG00021193


Basic Information

Item Value
RNA id AMCG00021193
length 4536
RNA type mRNA
GC content 0.57
exon number 54
gene id AMCG00021193
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8379989 ~ 8515922 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGGAAGACCATTTGGCAGGCTGTTGAGTTTATTGACAAAGAGAAAGGATTAGaCACTTACTTGTTATTCCTCGGGGACCCGGAGGCCCTGGGGCCCCAGGAAAACCGGGCCTTCCTGGGGTGCCTGGAAATCCATAAACAGTACTGCCAGGATTTCCTGTCTCTCCCTTCGGTCCTGGTGTTCCAGGAAAACCTGGACGTCCTGGTATACCTgagcaagaagaaaaaaagaggatctgaaaagagagaaagcatCTCATCTCCCACAGTGAGAAGGCTGGAGGGCCTGGAAGGCCTGGTTGTCCAGGGGGGCCCACTGGCCCTTCTTCACCTTGGAAGCCTGGGGTGCCATCTTGCCCGGGATCTCCAGGTGGACCTGATAGCCCATAAACTCCACTATGCCATTGATCAGCGGGCGGCCTGGGTCACCGGGTGGGCCCACATCTCCCTGGATATAGTAACCAAGGAGAGACAGGGTACGCTGAAGGCCCTGGGGATGGCGGCAGAGGGGAAGAAAGGAGAGCAGCAGGGCAGCAGGCAGAGGTACTGTCTCAGTACAGCCAAGGCCACACCTTTGACCACTAATAACCTTCTCATGCTGCAAGTCTTGCGCACGATCCCCAGGGCTGGGACCACTGCTCCGATCTGTGTTACCTTATCTCCTTTGAAGATAGTGCTTATCCCTGGCCCGCCTACTTGGATGACCCTTCAAGTCCCACGTTACCCCTCTCCCCCCTGGGTCCCTGTGGCCCCTGGCTACCCACAAATCCTGCAGGTCCATCGGGCCCTACAAGCCCCAGAGGTCCTGGTCGACCCTTTGGCACGGCTCATTGAGcagggacaaaaaaaaagtccctgGGCTGACTCGACATCTTCATTCGGCAAGCAGAGGAAGGAGGGGGGAGGCAGCCTAGACAGAAGCCTGGCCCACTGGGGGCATCGGGGTCTGGCAGGGCGGAAACTGATGAGGAACACACAGAAAGGGTTGCCAATACAAACAGTGGTCATGGCATGCCAAGAAAGGTTATCACTGGAGCCTGAatatggggaggtcagcagtgTACCAGACTTTACCAAACCAGACTCTGAGCAGCTGGAATGTGCAGCCATATTGGACACGTTACTCAATGGAACCATGCACTTCCTAAACGTAAgTTGGCAGCATGAAAAGGAATGGAAGGAGGTGGGCATTGAaagacaatacaattttaacctTTTCATAATGCCCTCTGAACTCCATTATGACCTCTCCATGACCACACTAGGGGTCCAACTCACAACCCACTACTTTgaaaaagATAGGAAACTTAAGACTTACAAACTTCAGCTGTGGTTCAAAAGCCTCCTCCGTGCCCGACCCGAATCCATGCAGACTGCGGCCAGCGCTGGAAGCACTGGAGGAAGGGGCGGGGCGTCGGCTGTCAATCAGAGGACATCTCAAAAAAGAGACGTTTCCCCTAAACTGCGCTGCTCCTTCGTTATCATGGATCACGGAAGTGAAGAATATGACAAGGCCCACTTCCACACTCAGTTGTCTATTGTTGAGCAGCGGTTTGCGGAgaaaatgaagatgaagaagTGTCAGAGTTTGCCCAACGTTGCAGTGAGTCTTCTGCTGGTAGTCCTGTGCCTCGGGGTTGACAAATCGCAGTCGGCGGATACCAAAGACAACCCTGAACATTTAAAAGACATAGccagtgtgtgttcagtggtCTCGCTGGTACATTCTAGTCCCACTCATCCACACCGCAAGCAGCTGGAACATGTCAGAAAAGGTTCAGACCCTCCAGATGTGAGCACGGTACGCCACCAGAGACCGGCGACTCCTCGCCAGCTGGTTCAGCTTCAACTCGTTCAGCATATCCTGAAACTCTTGAGCTTCAGATTTGCAGTGCTGGAACTTGACTCGGTAGGTGAAGGTGACGAGAGTCTGGAGAAGATAGCGAAGTTACAGGCTGGTTTTACCCAAGCCTTCCAGCCCATTAACTTCCATGATGTACACAGAGTCCACCTCCAGTTTGACTGTATCCAGCCTTTCAGAGAGCAGATCGGAAATGAGTTTAAAGCTGATGGGATTTCAGTCTGTGCTAGAGAACACAGTGCAGAGTTTTCTGAGAGGAGGCCAGAGTGTCTCCGCAATGTGGCAGCTAAGGTTACAGCATGCCATGGGTGCGCATCGGGATCAAAGTGTGACTGCAGTGGAGTGAAAGGAGAGAAGGTTTACAAGGCCAGCCTGGATTACCAGGTTTTGCTGGACCAGAGGGACCTATCGGACCCAGAGGCGAAAAGGGTGATCCGGGACCTCCGGGACCATTTGGACCCAAAGGAATTCGAGGACCGCCAGGGCTCCCAGGATTCCCAGGCACACCTGGACTTCCAGGGTTGCCAGGACAGGATGGCCCCCCTGGTCCCAGGGGCACACCAGGCTGTAATGGGACGAAGGGTGACAGAGGATTCCCAGGAAACCCAGGTTTTCCTGGTTTACAGGGCCCTCCGGGTCCACCTGGGGGAACCTGGGGAAGTGATTTCAGGAAGTCTCTTTGGTCAAAAAGGAGAACCTGGTCTGCCTGGCCTTCCAGGGGTGAAGGGATCCATGGGCCCTGAGGGGTTTACCGGCCCTATTGGCCCACCTGGACCTCCAGGTTATACGggTCAACCAGGTCCACCTGGCCCACCAGGTCCAAAGGGTAACATGGGTTTGAATTTCCAAGGTCCTAAAGGTGAAAAGGGTGATCAAGGTCTCCAGGGGCCTCCCGGGCCACCGGGGCTGATTGGTGAGCAGAAGAGACCCATAGACTCTGAGGTCCAGAGAGGAGACAAGGGTGATCAGGGGGTGCCCGGTCCGGCTGGGTTTCCTGGTCCACCTGGGCCTCCAGGTCTTCCTGGTGGTCCAAAGGGTGAGAAGGGGGAACCAGGTGAAGCCGGCAAGAGGGGAAAACCAGGGAAAGATGGTGATCCTGGGATTCCCGGAGGCCCTGGTGACCGAGGTGACCCGGGCAGTCCTGGCTTTCCTGGCAGAGATGGGGAAAGGgGTGAAAAAGGTGACCGTGGTTTTCcaggccccccaggactgGTGTTGAATGGTCCAAATTTCAACAGAGTGGGCCCAAAAGGGGAACCAGGATTCCCTGGAAATCCAGGaaggaagggagacagagggttCCCCGATTGCAATTCCCAAGTTTATCGGGTCCTCCAGGGCAGCCCGGACTTCCAGGTGTCTCCACTCCAGGGCAGCCGGGCCAGCCTGGTTTCCCAGGAGAGAGGGGGCAGAAGGGAGCTGAAGGACAGCCTGGCGTCTCTATACCCGGGTCACCTGGGGAGGATGGGCGACCGGGACTCCAAGGACCAcctggccctccaggaccaccTGGACTCTCTTCACAAGATGGGAATTGTCTGGGCGGGACTCCAGGTTTGCCGGGACTACAGGGGGAGCGTGGATTTCCGGGAGAGGTTGGCCAGAAAGGTGACAAAGGGGAAACCTGCATCAACTGTTTCATTGGAGACCTGCTCCCAGGGCCCCAGGGGCCACCTGGGCCTCCAGGGTTCCCAGGGTTTTCCTGGTAGTCAAGGCTTGCCTGGTATACCGGGTACGAAGGGGGACCCTGGTGAAGCCATCTCTCTCGCTGGGATGAAGGGTGATAAAGGAGACACTGGCTTCCCTGGCCCCCCTGGACTCCCTGGGCTTGAGGGAAGACCTGGTCGTGATGGTATTCCTGGTGCACCAGGAGCCAAAGGAACACCTGGATCTCTGCTGGTAAAAGGAGAACGTGGCCCACCAGGGGATTCAGGGCTTCCAGGCAGTCCAGGGGACAGAGGTCCTCAAGGCCCCCCCGGATTTGGCCCCCAGGGTCCCTCAGGGGAGAAGGGGGTCCAGGGGGTCCTAAGGGAGATCCAGGACAAACTGTATCGGAAAAGGGGGCTCCGGGTGTCAGAGGATCGCCCGGTGACCCTGGACTTCCAGGATCTCCAGgTAACCCAGGGCAGCCCGGACAGCCAGGTTTTCCTGGTCTGCCAGGCACAAAGGGGGACCCTGGCCTACCGGGCATTGGCCTACCTGGACCTCCAGGAACTAAAGGGTTCCCAGGGTCTCCTGGCTCATCCGGTTTACCTGGCCCCCCAGGAAGAGCTGGTACTGATGGGTTTCCAGGCACACCAGGGACACCTGGACCCAAGAGACTCCAAAGAGCATTCTTTCATTgGAGACCCAGGATACGGTCTCCCTGGGCCCCAGGGTCCCCCAGGACTTGCCGGGCCTAAAGGATCTTCTGGACTGAAGGGGGATTCTGGATTTCCAGGGAACCCTGGACAGCCAGGACGCCCAGGTTTTGATGGTACCCCTGGATCTAAAGtaACTGGAAAAAGGCACGTGTTGCAGATAACTGGGATCCTGGTGCACCTGGTCCGCCGGGAGCCAGAGGTCTTCCAGGACCTCAAGTATTTGGAATACCGGGGCCCCCGGGTCCCACAGGACCTCCTGGTGCTGTGGGTCCCCCAGATTATCTTGCCAACACAGGATTTCCAGGTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105055 lncRNA downstream 172439 8201759 ~ 8207550 (-) True G84203
TU105033 lncRNA downstream 263162 8064531 ~ 8116827 (-) False G84184
TU105170 lncRNA upstream 71647 8587569 ~ 8589053 (-) True G84304
TU105171 lncRNA upstream 73298 8589220 ~ 8590488 (-) True G84305
TU105173 lncRNA upstream 185657 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 225239 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 320353 8836275 ~ 8840659 (-) False G84332
AMCG00021192 mRNA downstream 7247 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021188 mRNA downstream 104359 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021176 mRNA downstream 355587 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021175 mRNA downstream 403868 7953072 ~ 7976121 (-) True AMCG00021175
AMCG00021173 mRNA downstream 465690 7906158 ~ 7914299 (-) True AMCG00021173
AMCG00021191 mRNA upstream 25719 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021209 mRNA upstream 42310 8558232 ~ 8580015 (-) True AMCG00021209
AMCG00021208 mRNA upstream 75102 8591024 ~ 8603676 (-) True AMCG00021208
AMCG00021202 mRNA upstream 115750 8631672 ~ 8636891 (-) True AMCG00021202
AMCG00021201 mRNA upstream 245781 8761703 ~ 8763622 (-) True AMCG00021201
TU104623 other downstream 1833412 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3628754 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5698227 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 5920610 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6402021 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 4011171 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4203942 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5111413 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5354017 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5534052 14049974 ~ 14051897 (-) True G85115

Expression Profile