RNA id: AMCG00021199



Basic Information


Item Value
RNA id AMCG00021199
length 966
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00021199
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8852325 ~ 8855863 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CTCGCTAgtgaaaatgcatgtttttcagGGGGAGTGGCATGTGTCGCGTGTGGCCAGCCGTTCGACACAGTGAAGGTGAAGATGCAGACCTTTCCCACCATGTACAGGGGCTTCATGGACTGTTCAATGAAGACCTACAGGCAGGATGGTCTGTACGGACTGTATCAGGGCACAACCCCTGCTCTCCTGGCGAACGTGGCGGAGAATGCAGTTCTGTTTGCCTGCTATGGATTCTGTCAGCAACTCACAAGGCGTCTGTTTGGGATGGAGAGTGTATCAGAACTCAGTGATCTGCAGAATGCAACGGCAGGATCATTTGCATCTGTTTTCTCCTCATTGGTGCTGTGCCCTACAGAACTGGTAAAGTGCCGCATGCAGGCTATGCATGAAATGAAGGTGTCTGGCAAGACTTCCCTGGCTCGTCGGGTCTCCACCTGGTCTATAGTAAAGGACATCCTGAAAACCGATGGGCCCCAGGGCTTATTTCAGGGGCTGACCAGCACTTGGCTGAGGGAAGTACCTGggtatttcttcttctttggaGGTTATGAAATCAGCAGAACTTTCTTTACCAAACCAGGACACACAAAAGAAGATTTGGGTGCTGCTCCTcttgttgtgtgtggaggtaTTGGAGGAGCTTTCTTCTGGCTTGCGGTCTACCCCATAGACTCAGTCAAGTCCAGAATCCAGGTTCTCTCGATGGCTGGCAATGCAAGTGATGAGATGGgccattttaatgtttactggtatgcaaatgtgaaatgtctGACTGTGCTGAAATGCACCTTTTTACCTTGCAATGTTCTTGCTAAAGATGGCTTCTGCGTGTGTTTTTCAGGGATTTCTGCTTTGTACTGTGGATTGACTCCTACTGTGGTGCGTGCCTTTCCTTCCAATGGAGCACTTTTTCTTGCTTACGAGTTAACAAGAAGATCTTTGACAAGCCAAGCTGCAATTAATTGA

Function


GO: NA

KEGG:

id description
ko04976 Bile secretion
ko04975 Fat digestion and absorption

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105163 lncRNA upstream 263362 8587598 ~ 8588963 (+) True G84298
TU105139 lncRNA upstream 293907 8555961 ~ 8558418 (+) True G84276
TU105099 lncRNA upstream 476287 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 644947 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 809156 8040224 ~ 8043169 (+) False AMCG00021180
TU105326 lncRNA downstream 564193 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 1008823 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 1008823 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 1150248 10006111 ~ 10009690 (+) True G84495
TU105471 lncRNA downstream 1369220 10225083 ~ 10225298 (+) True G84535
AMCG00021200 mRNA upstream 10143 8836212 ~ 8842182 (+) True AMCG00021200
AMCG00021195 mRNA upstream 50509 8780551 ~ 8801816 (+) True AMCG00021195
AMCG00021194 mRNA upstream 73904 8766301 ~ 8778421 (+) True AMCG00021194
AMCG00021189 mRNA upstream 297165 8549054 ~ 8555160 (+) True AMCG00021189
AMCG00021190 mRNA upstream 311676 8502496 ~ 8540649 (+) True AMCG00021190
AMCG00021196 mRNA downstream 81115 8936978 ~ 8939942 (+) True AMCG00021196
AMCG00021198 mRNA downstream 98085 8953948 ~ 8974608 (+) True AMCG00021198
AMCG00021197 mRNA downstream 149036 9004899 ~ 9011186 (+) True AMCG00021197
AMCG00021211 mRNA downstream 413114 9268977 ~ 9311705 (+) True AMCG00021211
AMCG00021212 mRNA downstream 468401 9324264 ~ 9339692 (+) True AMCG00021212
TU105166 other upstream 218915 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 1731088 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 1731088 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 4618569 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 4723109 4127271 ~ 4129216 (+) False AMCG00021113
TU105325 other downstream 560404 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 2107285 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 3219482 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 7207737 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 7734318 16590181 ~ 16592973 (+) True G85764

Expression Profile