RNA id: AMCG00021209


Basic Information

Item Value
RNA id AMCG00021209
length 1944
RNA type mRNA
GC content 0.50
exon number 16
gene id AMCG00021209
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 8558232 ~ 8580015 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGGAAGAGCCGCCCAATCACGGTGTCATGGCTGTAGTCACATGATGGACAGTGAAATCCCAGGAGCGGTGCAGAAACAGAAGCAGAAGCGGGGACATAACACCGAATCGCACGTTTCTGGCGGTTTTCAAAGTGCTCCAGAACTCAAGGCCTCAAGGGAAAGTCTTAAAATGGAACTACTGGCAGATGTTGCCCTTTTGCCTGGAGAAGAAAGAATTATAGACAAAGACATCATCTATATTTGTCCATTCAGCGGTGCTGTAAAAGGAAAAGTGTTCATAACAAATTACAGGGTTTTCTTCAGAAGTATTGAAGTGGACCCTGCAGTGTACCTTGATGTGCCTCTTGGAGTCATCAGTCGCATTGAAAAGATGGGTGGAGCATCAAGTAGAGGAGAGAACTCCTATGGCCTGGACATCACCTGCAAGGATATGAGAAACTTAAGATTTGCCCTGAAACAAGAAGGACACAGCAGGAGAGACATTTTTGAGATCCTTTTCAGATACGCCTTTCCCCTCTCACATGGTTTGCCATTATTTTCCTATTTAAGCCAGGAAAAGTTTGAAGAAAATGGCTGGAATGTTTACAGTCCTATCCAAGAATACAGACGACAGGGTTTACCCAACACAACCTGGAGGATAACCTTTTTGAACAAGGTCTATGAGCTGTGCGATACTTATCCCACAATTCTGGTGGTGCCTTTCAAAGCCACTGATGAAGACTTGCGGAAAGTGGCAGCTTTTCGGTCAAGGAATCGAATACCAGTACTCTCCTGGATCCACCCTGAAAACCAGGCTGTGATCATGCGCTGCAGCCAACCCCTGGTGGGAATGAGTGGCAAGCGCAACAAAGATGACGAGAGATACCTGGACACCATCCGAGAGGCCAACGGGCAGACTAGCAAGCTGACCATCTTTGACGCCAGGCCCAATGTCAATGCTGTGGCAAACAAGGCAACGGGAGGAGGGTATGAAGGAGAAGATGCCTATCAGAATGCTGAGCTGGTCTTCCTGGACATCCACAACATCCACGTCATGAGGGAGTCGCTGAAGAAGCTGAAGGACATTGTCTATCCTAATGTGGAGGAGTCCCACTGGCTCTCCAGCCTGGAGTCTACGCACTGGCTGGAGCACATCAAGCTGGTCCTGTCGGGTGCTATCCAGGTGGCCGATAAGATTTCGTCGGGTAACTCAGTGGTGGTGCACTGCAGTGATGGCTGGGACCGTACCGCTCAGCTCACCTCCCTATCCATGCTAATGCTGGACAGCTACTTCAGGACCCTGAGCGGCTTTGAGGTCTTGGTCCAGAAAGAATGGATCAGCTTCGGGCACAAGTTTGCTTCAagAATAGGTCATGGGGACAAGAACCATGCAGATGCTGACAGGTCTCCAATTTTCCTGCAGTTTATTGACTGTGTCTGGCAGATGACTAAGCAGTTTCCCACAGCTTTCGAGTTTAACGAGCAGTTCTTGATCACTATCCTGGACCATCTGTACAGCTGTCGATTCGGAACATTTTTGTACAGCTGTGACTGTGCAAGAGATGACAATGAAGTCAAAACGAAGACGATCTCTCTCTGGTCCCTGATCAACAGTGACAAGATGAAGTATGTAAACCCGTTCTATACGATGGAATCCAGTCGGGTGTTGTATCCTGTGGCCAGTATGCGCCACCTAGAGCTCTGGGTAACTTACTACATCCGGTGGAATCCACGAATCCGGCAGCAGCAGCTCGTGCTCACTAACCCCTGTGCGTGGTCTTGCCCTCCACAGCAGCAGAACCCGGTGGAGCAGCGCTACCGAGAGCTCCTGGCCCTGCGGGATCAGTACCTCAAGAAACTGGAGGAGCTGCAGCTCTCGGACTCGGCGCGCATCGCCAATAACTCCACCAATTCCCCGGCCTCCCCCACGCAGATCGCCCACCATGTACAGACTCCATTCTGA

Function

GO:

id name namespace
GO:0048741 skeletal muscle fiber development biological_process
GO:0007528 neuromuscular junction development biological_process
GO:0035335 peptidyl-tyrosine dephosphorylation biological_process
GO:0007626 locomotory behavior biological_process
GO:0010506 regulation of autophagy biological_process
GO:0046716 muscle cell cellular homeostasis biological_process
GO:0009790 embryo development biological_process
GO:0004725 protein tyrosine phosphatase activity molecular_function

KEGG:

id description
K01108 MTM1; myotubularin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105055 lncRNA downstream 350682 8201759 ~ 8207550 (-) True G84203
TU105033 lncRNA downstream 441405 8064531 ~ 8116827 (-) False G84184
TU105170 lncRNA upstream 7554 8587569 ~ 8589053 (-) True G84304
TU105171 lncRNA upstream 9205 8589220 ~ 8590488 (-) True G84305
TU105173 lncRNA upstream 121564 8701579 ~ 8701918 (-) True G84307
TU105177 lncRNA upstream 161146 8741161 ~ 8741413 (-) True G84311
TU105216 lncRNA upstream 256260 8836275 ~ 8840659 (-) False G84332
AMCG00021191 mRNA downstream 9614 8541641 ~ 8548618 (-) True AMCG00021191
AMCG00021193 mRNA downstream 42310 8379989 ~ 8515922 (-) True AMCG00021193
AMCG00021192 mRNA downstream 185490 8361931 ~ 8372742 (-) True AMCG00021192
AMCG00021188 mRNA downstream 282602 8264949 ~ 8275630 (-) True AMCG00021188
AMCG00021176 mRNA downstream 533830 7982400 ~ 8024402 (-) True AMCG00021176
AMCG00021208 mRNA upstream 11009 8591024 ~ 8603676 (-) True AMCG00021208
AMCG00021202 mRNA upstream 51657 8631672 ~ 8636891 (-) True AMCG00021202
AMCG00021201 mRNA upstream 181688 8761703 ~ 8763622 (-) True AMCG00021201
AMCG00021204 mRNA upstream 189318 8769333 ~ 8774394 (-) True AMCG00021204
AMCG00021203 mRNA upstream 222247 8802262 ~ 8818843 (-) True AMCG00021203
TU104623 other downstream 2011655 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 3806997 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 5876470 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 6098853 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 6580264 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 3947078 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 4139849 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 5047320 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 5289924 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 5469959 14049974 ~ 14051897 (-) True G85115

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000026_02080994_02090637.mRNA True 1938 mRNA 0.49 12 CI01000026 2080661 ~ 2090637 (+)