RNA id: AMCG00021211


Basic Information

Item Value
RNA id AMCG00021211
length 3338
RNA type mRNA
GC content 0.44
exon number 14
gene id AMCG00021211
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9268977 ~ 9311705 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

gGTCTTCCAGAATCTATCATTGCAGCTGCATGTTCCAGAATTGGCCAAAGGGTTTTGCATGTTGACAgGAGAACATATTATGCAGGAAACTGGGccagttttacattttcaggatTACTTTCTTGGATTGAAGATTACAAGCAAGATGGCCACAGCACAGTTGAAGTCAAAGAATGGAGGGATAAGTTACAGGAAGGGGAGGAGGCAATTCTGTTGAACCCTGTGGATAAAGCCATCTCCAATGTGGAAGTCTTCTGCTATGCCAGtgAGGAGTCTGAGgatgaggagaaggaggaatcACCCCCGCAGATATCACAGACCCCTGCAGAGCCAGAACAAGGGGAAGATCACCTGACCACCAGGGAAGACCACCCCTCAGAGACACTGGATAACATTGACCCACAGCCCCAACTCCAGGCCAAAGAACAAGGAGAACCTGTGGAGGAACACACTGCCACCAACAACAGTGATGCCGTACCTACTGAGCCTTTGGAAACGCCAGAAGCTGAGCAGACCAAACCAACTCCCAGCCAGCTACAGGACACTGAAGAGGGGAAGAGAAAACCGATTACCTACTCCAAAATCCTGAAAGAAGGCAGAAGGTTCAATATTGATCTGGTTTCGAAGctCCTATACTCGCGAGGTGCCTTGGTTGATCTCCTTATCAAGTCCAACGTCAGTAGATATGCAGAATTTAAAAACGTCACTAGAATTCTCACCTACCAGAATGGAAAGGTGCAACAGGTACCTTGTTCTCGAGCAGATGTCTTTGCGAGCAAGCAGCTCACCGTCGTGGAGAAGAGAATGCTAATGAAGTTCCTGACCTTCTGTATGGACTACGAGCAGCATCCCGAAGAGTACCTGGATTTCAAAGACCGCTCATTTTCAGAGTTTCTGAAGACTAAGAAGCTAACTGAGAACttgcagcattttgttttgcattcaatCGCCATGGCTTCGGAGGCTGACAGCACAACCGAGGGTCTGAAATCCACCCAGCACTTCCTCCAGTGTCTGGGGCGCTATGGGAACACGCCCTTCCTCTTCCCACTCTACGGGCTGGGAGAAATCCCGCAGTGCTTCTGCAGGATGTGCGCGGTTTTTGGAGGAATCTACTGTCTTCGGCATTCTGTCCAGTGCCTGGTGGTTGACAAAGAATCTGGGAGATGTAAAGCCGTGATTGATACACACGGACAGCGAATCAGCTGCAACCACTTTATTGTGGAAGACGGTTATGTGGCTGATGAACAGCGCAAGAGTGTTGAGTACAGGCAAATTTCTCGAGCAGTTCTCATTACTGATCGATCCTTGTTAAAAGCAGACTCAGATCAACAGATTTCTCTGATATCTGTCCCTCCACTGGAGGCTGGGCAGACTGCTGTCCGTGTTATTGAGCTCTGCTCCTCGGCCATGACCAGCATGCAAGGCACCTACTTGGTCCATCTTACCTGTCAGTCTTCTGGGACTGCTAAAGAGGATCTCACTCCAGTCGTGTCCAGACTCTTTAAGGAATATGAGAATGCAGAAGAGAATGAAGATTCGGAAGAAGAGAAGCCTGCAGTGTTATGGGCTCTTTATTTCAACATGAGAGACTCTTCCGAGGTGGAGAGGAGCTATTACGATCTGCCGAGTAATGTCCACGTGTGCTCTGGGCCTGCCGCGGCACTGGGCAGCGATCACTCTGTCAGACTGGCTGAAAGCATCTTCCAGCAGCTGTTTCCAGATGAGGAGTTCTGTCCACCGGCTCCCAACCCAGAAGATATTATTTATGATGGCGACGGAGGGCAGGCAGAGGGTGCTGGGTTTGGAGACCATCAGGAGCCCGAGGCCTCCAACCCAGCAGAGGGCGCTGTTTCCATGGAATGTAAGCCCCCCAAGTCAGAAGAGAGCGTTGACCCTAATGTGGACAGTGAGGATCCCCCACAAGAGACCACTGCAGAGACTGAGACGCCCGCTCCGTACTCCCAGGTGCTTCCTGCTGCCAGTGACCCCAGTGCAACTAAATAACCCATTTCATAACTGccctttaaaacacttttatttgtttttttgttaatgtaatgtgCTGTTGTCTTGTTATCTCCAGTATTCCAGCTTTTACAAACCTCAAAGCCTTAGACGTAATATAACATTTCACTGAAGGTGAGCAGTATCTGTACACTGAGTATATCctatattttaaacagcagttGGTATAATCTTCACCGTTGGGAAGCAATTCTCAAAGAGGAGGGTGTGGTGCGTAATGGGTGTCTTCAGAGTGATATCTGTGCATGTAGGGACTGAAGTATTCACAATTGTAGACTGCATTTATTTGTCACCGTTGTAGTAGTTTAccaaattttacatttataattaatcaAAGGATTGCTACAGGTTACATGTCATTGGCTTTATAACTTAATCCTGTATTTGGTTATATCCTTGGCTTTATTAATGCCTTACGGTTATATTGTCACAGTAAAGGGAATTAATACCAGTGgactttttcagtttaattctgGAAAATTAGATTGTTtatgcatgtatacatacatacatatgtatatgtgtgtatatatataatcactaCAAATACATCAGTTTCAATCTCTATAAGTATACCGTATAGAagattttttcttatttttctattatttaactgtatacatGGTCAGATGAGAAGGTCTTACCACTTGTTTGCTCTGTACTGTCCAGACAGACACTATGCTCTGCTCTGCTTTGCCATTCACAATGCACATGGAATCCCAGATATGCATGTTTATAATGCTTCTGCAGAAAGAATAGTGTACACCCATGGGAATGCATCGATGTGCTTCGCTTTACTAAGGGAAACTATGCAATATTGGGCGGGGGGTATTGTCCATGAACTGAAATCAGAATTCTCTCATCATATATCCTGATCAAATGCTTAGTAACATAAACAGATGCAAGCCAATGCTGCAAAAGTGTAACATGAAATACTGTTCGAGGTCACCTAACAGCAGAAATATCTATTGCGTTCCTTGTAAAATAATAGCTATGATTTTGGAATCCACATCGAGGAAAAAGTCTGGGCAGACATTGGAAAAAAGCAGTTCTTGCCCAGGTTCAAAATTACTCATCACAAAGCCTTAACAGATGTTGTCTTTTCCACTAAAAGACTAGCTACATAAGATTGGACTTTCCAACTGTATTGCATGATGCGTTAGTCCTTATATAAAGCTTGTGCAATGTGCAATCTGACAAAATCTTGTAGTTGTTGCTGTCCttgttaaacatgtttatttataaagtttGTGTATTATTTCTTGGTATGTAATAAAGATTTCTGACGTGTATTCTCAGATTAAAATGGG

Function

GO:

id name namespace
GO:0050910 detection of mechanical stimulus involved in sensory perception of sound biological_process
GO:0048798 swim bladder inflation biological_process
GO:0050935 iridophore differentiation biological_process
GO:0042491 inner ear auditory receptor cell differentiation biological_process
GO:0060042 retina morphogenesis in camera-type eye biological_process
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
K23460 CHM, CHML; Rab proteins geranylgeranyltransferase component A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105163 lncRNA upstream 680014 8587598 ~ 8588963 (+) True G84298
TU105139 lncRNA upstream 710559 8555961 ~ 8558418 (+) True G84276
TU105099 lncRNA upstream 892939 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 1061599 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 1225808 8040224 ~ 8043169 (+) False AMCG00021180
TU105326 lncRNA downstream 108351 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 552981 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 552981 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 694406 10006111 ~ 10009690 (+) True G84495
TU105471 lncRNA downstream 913378 10225083 ~ 10225298 (+) True G84535
AMCG00021197 mRNA upstream 257791 9004899 ~ 9011186 (+) True AMCG00021197
AMCG00021198 mRNA upstream 294369 8953948 ~ 8974608 (+) True AMCG00021198
AMCG00021196 mRNA upstream 329035 8936978 ~ 8939942 (+) True AMCG00021196
AMCG00021199 mRNA upstream 413114 8852325 ~ 8855863 (+) True AMCG00021199
AMCG00021200 mRNA upstream 426795 8836212 ~ 8842182 (+) True AMCG00021200
AMCG00021212 mRNA downstream 12559 9324264 ~ 9339692 (+) True AMCG00021212
AMCG00021218 mRNA downstream 291887 9603592 ~ 9613134 (+) True AMCG00021218
AMCG00021217 mRNA downstream 314855 9626560 ~ 9629641 (+) True AMCG00021217
AMCG00021219 mRNA downstream 402832 9714537 ~ 9829743 (+) True AMCG00021219
AMCG00021226 mRNA downstream 635455 9947160 ~ 9947483 (+) True AMCG00021226
TU105166 other upstream 635567 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 2147740 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 2147740 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 5035221 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 5139761 4127271 ~ 4129216 (+) False AMCG00021113
TU105325 other downstream 104562 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 1651443 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 2763640 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 6751895 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 7278476 16590181 ~ 16592973 (+) True G85764

Expression Profile