RNA id: AMCG00021212


Basic Information

Item Value
RNA id AMCG00021212
length 2077
RNA type mRNA
GC content 0.55
exon number 11
gene id AMCG00021212
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9324264 ~ 9339692 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AAACTTCACCCCATTTGAGGGATTAATAATGTGTGAAAGCAGGGGCAGACCAGACTTCTTAAAGCCCCCAGAAAAAAATGCTGCAGTGGCCCGCAAGAGCTCCAAAGAAACGACCCTGCAGCTAAAAGTGTTGTTTCTGGATGACACTGAACAGATATTTGAGGTTGAGcaaagAATTCTGGGAAATGACTTCTACAACAAAGTCTGTGGGCACCTGAAGCTGCTGGAGAAGGAGTACTTTGGGCTCGAGTTCATAGTGAAGTTTTTCCCACCTGATCCAGGACAACTGCAGAAAGAGCTGACGAGgtATCTGTTCGCCCTGCAGATCAAGCAGGATCTGGGCAATGGAAGCCTCACTTGCAATGACAACAGTGCTGCTCTGCTGGTGTCCCACATCTTGCAATCAGAGCTGGGCGATTTTGATGAAGAGCTTGATATGCAGCATTTGGAGAGTAAACGATACGTCCCCAACCAAGAATACCTGGATAACAAGATCATGAGGTTTCACAAGAAACACAgAGGCCAGTCACCAGCAGATTGTGACGTCCAGCTGTTAGAGGTAGCCAGGAAGCTGGACATGTATGGAATACGACCTCACCCGGCCAACGACGGAGAGGGAATGAAGATCAATCTGGCGGTCACGCACATGGGGGTTCTGGTGTTCCAGGGtaacaccaaaataaacaccTTTAGCTGGGCCAAAGTTCGCAAGCTCagctttaaaaggaaaaactttTTGATAAAGCTCCATGCAAAAATCGTTCCATCCCGGAAAGACACGGTGGAGTTCACCATGGCTAGCAGAGACGTTAGCAAGGCCTTCTGGAAGATGTGTGTGGAGTACCACGCCTTCTTCCGGCTCTCGGAGGAGCCCAAATCCAAACACAAGTCCATCCTCTACAGCAAGGGCTCCTGCTTCAGATACAGTGGAAGAACCCAAAAGCAACTGCTGGAGTGTGTgggaaaaggagagaaaaagaacCTGCCCTTCGAAAGgaagCACTGTAAAGCTCATTACGATACCCGCCAGTGCAGGTCCTCCCCCGATCTGCTGACAGATGTCTCCAAACagGCATACGAGCAGATGCACTCCTTTGAAAGGCCTGGTTACAGTAAAACCTCCAGTGAGAAAGCGCCACAGCCCGTCCTGAGTGGGAAACGCAGCCAGTCGGCCGTGGAGGTGGTGTTCTCGGCAGAGCTGGAGCGCTCCAAACCCGAGGCCGACCCAGCGGCCTTCAGCCAGTCACGCAGCAACTCGTTCTCGTCTTTCCAGGCCGAGGGCCAAACCGAGGGCCAGGTCGGGCTCCTGCAGAGCCAGCGACAGCGCATGTGCTTCGCCAGGAGCAACAGCATCACAGAGGTCCATCGTAGCCGGCTGATCACCAACCCCCAATTGCTGCGGCGCTCAGACTCGCCTGGCTACCCCCTAGCTGTGGAGGGCTTCGTCTCCAGCGCCTCCTTCTACCTGGACCGCCCCCCCCGCCTGCCCCGACACACCTCTCTCGCGGAAGACGTCATCAGGTCCTCCAGCTTCTCCAGCCCCGCCACCATCTCTCCCTCCGGCCGGCGCCACAAGTACAGACACAACGGCCTCTACCAGGCGGGGGTGACCAGCTGCAGCAGCCGCATCAACATCGGGAGGGAGGACACGGGTCACTTCAGCGACGACTCCAGCTACCAAACCGCCCTGCCCAAGAGGTCCTGGAGCCAGTCTGACATGAAGTTCCTGCACCCGACTCACTCCTCCGAGTTCAGACCCCTGGGGTACTACCCTCACTTGTCTCGGAGGTCCGGTATGGTACGCCACATGTTGCCACAGCACGGGCACACGGACCGCCCCAATTCGCTCTGTGTGATGGACAGATTTGGCGCTGGAACCGATTTCAGCGATTCTGACTCTGACAGCATCTATCCATACTACTACCCCATCCTTGGCAAACTGGTGAAAGCCACCCCGCTGGCCAGGATGAGGATTTCGTCCGGCAGCCTCCAGCtggatgaagaggaggaggactcCTTCAACCTGAGTGACTGTGAGGGCGTCAGTCCGTCGGTGACTGCGGCTGAGCTCCAGTCT

Function

GO: NA

KEGG:

id description
K23971 FRMD7; FERM domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105163 lncRNA upstream 735301 8587598 ~ 8588963 (+) True G84298
TU105139 lncRNA upstream 765846 8555961 ~ 8558418 (+) True G84276
TU105099 lncRNA upstream 948226 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 1116886 8201838 ~ 8207378 (+) True G84196
TU105006 lncRNA upstream 1281095 8040224 ~ 8043169 (+) False AMCG00021180
TU105326 lncRNA downstream 80364 9420056 ~ 9423419 (+) False G84425
TU105395 lncRNA downstream 524994 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 524994 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 666419 10006111 ~ 10009690 (+) True G84495
TU105471 lncRNA downstream 885391 10225083 ~ 10225298 (+) True G84535
AMCG00021211 mRNA upstream 12559 9268977 ~ 9311705 (+) True AMCG00021211
AMCG00021197 mRNA upstream 313078 9004899 ~ 9011186 (+) True AMCG00021197
AMCG00021198 mRNA upstream 349656 8953948 ~ 8974608 (+) True AMCG00021198
AMCG00021196 mRNA upstream 384322 8936978 ~ 8939942 (+) True AMCG00021196
AMCG00021199 mRNA upstream 468401 8852325 ~ 8855863 (+) True AMCG00021199
AMCG00021218 mRNA downstream 263900 9603592 ~ 9613134 (+) True AMCG00021218
AMCG00021217 mRNA downstream 286868 9626560 ~ 9629641 (+) True AMCG00021217
AMCG00021219 mRNA downstream 374845 9714537 ~ 9829743 (+) True AMCG00021219
AMCG00021226 mRNA downstream 607468 9947160 ~ 9947483 (+) True AMCG00021226
AMCG00021225 mRNA downstream 635351 9975043 ~ 10004002 (+) True AMCG00021225
TU105166 other upstream 690854 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 2203027 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 2203027 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 5090508 4230972 ~ 4233756 (+) False AMCG00021114
TU104390 other upstream 5195048 4127271 ~ 4129216 (+) False AMCG00021113
TU105325 other downstream 76575 9416267 ~ 9423419 (+) True G84425
TU105614 other downstream 1623456 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 2735653 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 6723908 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 7250489 16590181 ~ 16592973 (+) True G85764

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00001664 True 1083 mRNA 0.46 9 NC_007112.7 10336685 ~ 10347307 (-)
grasscarp (Ctenopharyngodon idella) CI01000040_01332036_01345122.mRNA True 2262 mRNA 0.52 12 CI01000040 1332036 ~ 1345156 (+)