RNA id: AMCG00021214


Basic Information

Item Value
RNA id AMCG00021214
length 2348
RNA type mRNA
GC content 0.39
exon number 6
gene id AMCG00021214
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9377192 ~ 9387360 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTTTGGTTTCCTCTCTTATCTCACTCGGGCTGCTGCAGTTTCACCCGGGGACGCGGAAACAAGCTGCTCTCACATCAGATACCGAGCAGTTCCTCACACGGATCAATATATCGCCTGTATTTTGCCGATATCGGCCGTGAACCCCGCTTCGTGCCAGCGCGGTGCCGTGCCCTCAGGATGCGCCCCGCTCTCCTGCTGCTGTGCGCCGCCGCGACCGCGCTAGGGTCGGCTGACAACAGGACGGgcAAACTCCCTCCACCAACTAATTTAACCATTGTGTTGAAAAATGACTGCTGTGTGCAGTTAAAATGGAGTCCCCCTGATGGCTTGGACACAAACACCTGTAAGGTCAAGTATGTCGTGGAAGGCAAACAGCGTTACAGATCATTCTACACCTCTTATGAAGAATGTTTTGATATAACTGATCATCTAGCATCAGTGAAAGACTTTGAGTGCTTCATGTATGAGAAGGAACACATAAACTGCACCTGGCTTCCGGAGAACAACCAAATCATCAGCCTGCTTCGGGTACTGATTCTGCCTGACATCCCTGATCCCAGCGCCATCTTCAAAGTGGTCGCCAAAAGTGATGGTCGGTTTATGCCAATGCCTTTTCAGACATGgGCTACGAGTAAGGAAAAGGAATATGATTTGTTTGAACCCAAAGATGAAGATGTGTCTCAGTTGGTGGTGGAACAGGTGCCCGAGTGTGCGCAGGATAAATAACGCACGAGACCCCAGGAACAGCACACGTCAACTTTTCATGTGTGACATCTTGTAACTCAGAATCATGTCATTTTCTCAGGGAGACTCTGCTACATAGGAAACGAGTCAAACATTGGGATCAGGTATTTCCAACAGAACTCCAGTCTGACTACAGATTTCATAAATTAATTGGACCCTTTCCTCCCTGGAAATctaggaaaaaataagagagagGATCTCCTGAAGACTGCTCTTAGGATCAAAATGTCAATGCCTTCTTGTATACAtctaacatttttaattgacgTAGAAAACACTCCTGTCTGGTTCCTGAGAGCTCGGCCAGGATAGTGAAAGTAAAAAGGACAATTAAACATTCAGGCGTTGCCTTTTGTTAAATGGTGTGCTAAATTGACCTCCACAATCAAACAGATTATCTTACAGCACAACTGCAGCTTGTATGCTATGTCAAAGGAAGtttattaattgtgtttattaatatgttGTCAATTATGTTACAGACAATGTATGACCTTTGAAAACATTCAGCATATTGCTCAGGTTTCACAAAGTAGGTATTCATTTGCGGTAAATTGAGCGACAGAACAGTGTATAAGCTTTTGGAAGTGTGCTGCAACAGTTTTATATAGCAGTATCTTATTCAACAGGTGCCATAATTTATAAGGCTAGCCCAAGTTTTGTACATAGTAGGTATGAATGGCATATTGTCATTTTGATCATATCAAAAAGGACTTTATGACTGAATTTTTAGGCAGACAATTTTCAGAAGATGTATGCAAATATATCTTTGGCATTCATTTGCACAAATTTTCATTTGGCATGAAAATCAAGATCAATAAAATGACTGGGAACAGCACTTTTCCAATAACGCACAGACTCCCCTTAAACACTAATGCAATCAATTTTTCaacataatttgtgaaaatatcataataataagctACTGAATACATGAACTAATAATtcatacaattttgttttaagaatgcTACTCTCAAACTGTGAGAAAGCTCTGTTGGGAATAGGGATTCATATCTCCCTAAAAATGGTTGTAAATGAAAAGAAGGAAGATCATGCAAATCTTTCAAACTGTAAAACACGGGTTTTGTCAGCTTCATTCCCATTCTCCTTCATCAGAGGTTAGTGCCGTTTCTCTTGGTGCATCGTTGGCGGCTTAGTGTAATGATAAACATCCTTATCCCTACCAGAATGAGTTTAATTTCctgttaaatttaaatgtatttacacaacGAAGGTTGAGCAGTTCTACGCTAGTACTTTCCAGGAAGCggaccttttttcttttttcttttttgtttaatgatagATTTATAAGGGAGTGTAACTGTAAAAATGTTAGtgacaaatgtattgtaaaataaatgcagttttttcAAGTGTTGTGCTATatgagaaaacaatgttttgtatatattcatttaataaaCAACTGTTCACTAtctgtttaaaaagcaaaataacaaaagtaaagatgttttatatattatatataatttatagttTTAACATACCTGTATATAAAGCACATTAATATAATACTTAACAGAATAATCACTTGTTGTAAATTTCTATATACAGACAGCTATAAATATGgtgtgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105216 lncRNA downstream 536533 8836275 ~ 8840659 (-) False G84332
TU105215 lncRNA downstream 536533 8836308 ~ 8840659 (-) True G84332
TU105217 lncRNA downstream 536533 8836308 ~ 8840659 (-) False G84332
TU105177 lncRNA downstream 635779 8741161 ~ 8741413 (-) True G84311
TU105173 lncRNA downstream 675274 8701579 ~ 8701918 (-) True G84307
TU105443 lncRNA upstream 700344 10087704 ~ 10090475 (-) True G84514
TU105548 lncRNA upstream 1025815 10413175 ~ 10414481 (-) True G84603
TU105563 lncRNA upstream 1087057 10474417 ~ 10477459 (-) True G84614
TU105608 lncRNA upstream 1455372 10842732 ~ 10843021 (-) True G84651
TU105624 lncRNA upstream 1763626 11150986 ~ 11151438 (-) True G84667
AMCG00021213 mRNA downstream 9539 9341453 ~ 9367653 (-) True AMCG00021213
AMCG00021210 mRNA downstream 142993 9233425 ~ 9234199 (-) True AMCG00021210
AMCG00021207 mRNA downstream 254763 9084763 ~ 9122429 (-) True AMCG00021207
AMCG00021206 mRNA downstream 302806 9068018 ~ 9074386 (-) True AMCG00021206
AMCG00021205 mRNA downstream 377588 8982496 ~ 8999604 (-) True AMCG00021205
AMCG00021215 mRNA upstream 3167 9390527 ~ 9455880 (-) True AMCG00021215
AMCG00021216 mRNA upstream 96058 9483418 ~ 9514021 (-) True AMCG00021216
AMCG00021223 mRNA upstream 446158 9833518 ~ 9834063 (-) True AMCG00021223
AMCG00021222 mRNA upstream 461600 9848960 ~ 9860715 (-) True AMCG00021222
AMCG00021221 mRNA upstream 477331 9864691 ~ 9879985 (-) True AMCG00021221
TU104623 other downstream 2830615 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 4625957 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 6695430 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 6917813 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 7399224 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 3139733 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 3332504 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 4239975 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 4482579 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 4662614 14049974 ~ 14051897 (-) True G85115

Expression Profile