RNA id: AMCG00021219


Basic Information

Item Value
RNA id AMCG00021219
length 2061
RNA type mRNA
GC content 0.46
exon number 16
gene id AMCG00021219
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 9714537 ~ 9829743 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGCGGCCATAGGGACATCATGGATGGCCATCCAGAGCTTCTGGAGCTGCGATGCACAGCCGGAGGTGGAGAAAAATAAGCAGCAGTTCCCGTACTGTGAAGGCCAAGTGCGGCAGACATACCTGGAGGGCTCCTGTGAAATGGGGTGGCTGAAGGGAAGGATCGCCATTTGTGAAAGGAGGCGGCAgggcaacaaaaacacaaaacagcagataCATCGGTCGATGGAGTTCAACCATGATGGATTATTTGGTGAAGGACTTAAACCAGAACTCTTTGGTTTCCTTTCTGGATCACAGTGTAATGTAGTGGAATCTGAGAACCCCATCTCAAGAGTacacagtagcagcagcagcagatcaACCGAAGAGAAGAGGCTTCTGGGAAATTCTGAGTACATCATCATCACTAACACGCATAACACACATGCCATCCTCACtaacacacagagaaaacagtCAAGCAGATCTCTTATGGGGTATGCGcCTGATTTGTGTGAAACATCTCACGTTGGTGAAAAAGATGAGAATGTGGAAAGAGGAAACTGGTCCAATAAGAAAGAGTACCTGCTCTCAATGATTGGATATGCAGTGGGACTTGGAAATGTTTGGAGATTCCCATATTTGGCTTACAAAAATGGAGGAGGTGCTTTTCTCATTCCATATGTTATCATGTTGGCCTTTGCTGGGTTGCCCCTGTTTTTCCTGGAATGCTCCTTTGGGCAATTCACAAGCCTGGGTCCGATCTCTTTGTGGAAGAATGTACCAATCCTGCAAGGTGTGGGAATCACAATGGTGGTAGTATCCACTCTTGTGACAATCTATTACAACTGTATCATCGCTTACAGTATTTACTACCTTTTTGCTTCCTTTCAATCCCCCCTGCCGTGGAGTGACTGCTATGACTGGTCTGATGAGAATTGCAGCAAGTATCCTAAAGagCTCTGCAACATTACATCAGGAGAtggaggttttatttttgttaaccaTACATGGTTGACTGACAACAATGAAACTTGTCCAAAGCCAAGCATAATTTCTTTGCCACAGCAAGGTCCCAGTGAACAGTTTTGGGACAAAGTGGCGCTACGTCGATCTAGTGGATTGGATGAAACTGGAGAAGTTGTGTGGCACTTGGCTCTTTGTCTACTTCTATCATGGATATTAGTGGGAGCTGCCGTGTATAAAGGAATCAAGTCTTCAGGAAAAGTTTGGAAAGATGCCGCAAATCAGATTTTCTATTCCCTTTCCACTGGTTGGGGAGGCCTGCTGGCCCTGTCTTCCTACAACAAGTTTCACAACAATTGCTACGCAGATTCAATAATTGTCTGCATAACCAACTGTGGCTCTAGTGTGTTTGCTGGCTTTGCAATCTTTTCAATCCTTGGGCACATTGCTCATGTGTCTGGAAAGTCAGTGTCAGAGGTAGCCCAGTCTGGCTTCGGCTTGGCCTTCATTGTGTACCCCGAGGCACTTTCAAATCTGCCAGTGTCTCCTTTGTGgtctgtgctgtttttcttcatgCTTGTAACACTGGGTCTGGATTCCCAGTTTGCTATTATAGGTAAGCTTTATGACCAACTTGCTCCTCATAAGCTTGCTGGAATATACTGGGTGAATTTAATTGACCATTTCTGTGCTGGATGGATCATCCTTATTGCTGCATTGCTGGAATTCATTGGAATTTCCTATATCTATGGAGTAAACCGATTCATCAAAGACATTGAAATGATGATTGGAAAAAAGAGCGCCCTCTTCTGGCTGTGGTGGAGAGCCTGTTGGTTTTTTATCACCCCATGCTTGCTTATAGGAATTTTCACCTGGTCTCTGTCAAATTTCACTTTGCCATCCTATGGCTCAGTGGTCTATCCCAACTGGGGGACGTCACTGGGCTGGTGTATAACAGCATTCTGTGTCATGTGGATTCCCATTATTGCGGTTCTAAAAACACTACAGGCTAAAGGTAACTTGTGGCAGCGCATCAAAATGGTATGTTCCCCGACAGCGGACTGGGGCCCTTACCTGCAATGCCACAGAGGTGAACGGTACAAGGACCAG

Function

GO: NA

KEGG:

id description
K05047 SLC6A14; solute carrier family 6 (neurotransmitter transporter) member 14

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105326 lncRNA upstream 291118 9420056 ~ 9423419 (+) False G84425
TU105163 lncRNA upstream 1125574 8587598 ~ 8588963 (+) True G84298
TU105139 lncRNA upstream 1156119 8555961 ~ 8558418 (+) True G84276
TU105099 lncRNA upstream 1338499 8375331 ~ 8376038 (+) True G84244
TU105048 lncRNA upstream 1507159 8201838 ~ 8207378 (+) True G84196
TU105395 lncRNA downstream 34943 9864686 ~ 9878867 (+) False G84477
TU105397 lncRNA downstream 34943 9864686 ~ 9868508 (+) True G84477
TU105424 lncRNA downstream 176368 10006111 ~ 10009690 (+) True G84495
TU105471 lncRNA downstream 395340 10225083 ~ 10225298 (+) True G84535
TU105473 lncRNA downstream 398162 10227905 ~ 10262453 (+) True G84536
AMCG00021217 mRNA upstream 84896 9626560 ~ 9629641 (+) True AMCG00021217
AMCG00021218 mRNA upstream 101403 9603592 ~ 9613134 (+) True AMCG00021218
AMCG00021212 mRNA upstream 374845 9324264 ~ 9339692 (+) True AMCG00021212
AMCG00021211 mRNA upstream 402832 9268977 ~ 9311705 (+) True AMCG00021211
AMCG00021197 mRNA upstream 703351 9004899 ~ 9011186 (+) True AMCG00021197
AMCG00021226 mRNA downstream 117417 9947160 ~ 9947483 (+) True AMCG00021226
AMCG00021225 mRNA downstream 145300 9975043 ~ 10004002 (+) True AMCG00021225
AMCG00021224 mRNA downstream 186777 10016520 ~ 10029583 (+) True AMCG00021224
AMCG00021229 mRNA downstream 214438 10044181 ~ 10044720 (+) True AMCG00021229
AMCG00021227 mRNA downstream 237485 10067228 ~ 10078775 (+) True AMCG00021227
TU105325 other upstream 291118 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 1081127 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 2593300 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 2593300 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 5480781 4230972 ~ 4233756 (+) False AMCG00021114
TU105614 other downstream 1133405 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 2245602 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 6233857 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 6760438 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 6826901 16656644 ~ 16661882 (+) True G85787

Expression Profile