RNA id: AMCG00021232



Basic Information


Item Value
RNA id AMCG00021232
length 624
RNA type mRNA
GC content 0.52
exon number 3
gene id AMCG00021232
representative True

Chromosome Information


Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10344129 ~ 10355983 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGCCGAGGTCGGGGGCTTCCTTGGGGCGCTGGATCTGGATTTACAAGCTTTTCCAGCTTTTGGGAATATCCCTCTGCCGGAGTCCCCTGTGGGTCTGGATGAGAGATTGGGACAGATTGAAGGGAAGTTGCAGAGGGGCTCCCTGACGGATTTTGGGCACTTCAGAGGCATCTTGCGGCGAAAGCAGCAGCTGTACTGTAGGACTGGGTTTCATCTGGAGATATTCCCCAACGCCACGGTACACGGGACCAGACAGGACCACAGCAGATTCGGGATTCTGGAGTTCATCAGCCTGGCTGTGGGACTGGTCAGTATCCGTGGTGTTGATGCTGGACTCTACCTGGGAATGAATGAAAGGGGCGAGCTCTATGGGTCGAAGAAGCTGACGGCAGAATGTGTGTTCAGGGAGCAGTTTGAAGAGAACTGGTACAACACCTATGCATCAACTCTCTATAAGCATTCAGATACAGATAGGTATTACTACGTTGCCCTTAACAAAGATGGCTCCCCAAGGGAGGGAGGCAGGACTAAAAAGCACCAGAAGCTGACTCATTTTTTACCGAGGCCAGTGGAAATTGAGAAGATCCCACTAGCATACAGGGACCTATTTCAGCACAGGTGA

Function


GO: NA

KEGG:

id description
K04358 FGF; fibroblast growth factor

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU105473 lncRNA upstream 81676 10227905 ~ 10262453 (+) True G84536
TU105471 lncRNA upstream 118831 10225083 ~ 10225298 (+) True G84535
TU105424 lncRNA upstream 334439 10006111 ~ 10009690 (+) True G84495
TU105395 lncRNA upstream 465262 9864686 ~ 9878867 (+) False G84477
TU105577 lncRNA downstream 279413 10635396 ~ 10636269 (+) True G84627
TU105578 lncRNA downstream 334758 10690741 ~ 10690964 (+) False AMCG00021240
TU105619 lncRNA downstream 680598 11036581 ~ 11036826 (+) True G84662
TU105622 lncRNA downstream 783294 11139277 ~ 11139491 (+) True G84665
TU105623 lncRNA downstream 795193 11151176 ~ 11151438 (+) True G84666
AMCG00021233 mRNA upstream 64978 10274489 ~ 10279151 (+) True AMCG00021233
AMCG00021227 mRNA upstream 265354 10067228 ~ 10078775 (+) True AMCG00021227
AMCG00021229 mRNA upstream 299409 10044181 ~ 10044720 (+) True AMCG00021229
AMCG00021224 mRNA upstream 314546 10016520 ~ 10029583 (+) True AMCG00021224
AMCG00021225 mRNA upstream 340127 9975043 ~ 10004002 (+) True AMCG00021225
AMCG00021235 mRNA downstream 26447 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021240 mRNA downstream 114080 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021247 mRNA downstream 637801 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021245 mRNA downstream 1436255 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021244 mRNA downstream 1488526 11844509 ~ 11847471 (+) True AMCG00021244
TU105325 other upstream 920710 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 1710719 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 3222892 7115381 ~ 7121237 (+) False AMCG00021150
TU104814 other upstream 3222892 7115381 ~ 7121237 (+) False AMCG00021150
TU104395 other upstream 6110373 4230972 ~ 4233756 (+) False AMCG00021114
TU105614 other downstream 607165 10963148 ~ 10987174 (+) True G84657
TU105723 other downstream 1719362 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 5707617 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 6234198 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 6300661 16656644 ~ 16661882 (+) True G85787

Expression Profile