RNA id: AMCG00021234


Basic Information

Item Value
RNA id AMCG00021234
length 3588
RNA type mRNA
GC content 0.37
exon number 10
gene id AMCG00021234
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 10279868 ~ 10294869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGATCTTCATGTAGTTGTCTGAACATGGCTCTGTCGAGAGGGCTGAGGTGGTGCCAAAGGATTTTCTCCTGGATACCTGTCATTATTATCACTGCCGTGGTGTTGTGGTCTTATTACGCCTATGTTTTTGAGCTGTGTCTGTTTACACTCAGCAACACTCTAGAAAAAGTTGCCTATATACTGGTGttccatgtttgttttacaatgtttgcCTGGACGTATTGGAAGTCTATCTTTACACCCCCATCTTCACCTTCAAAAAAGTTCCATCTATCCTACTCGGACAAAGAAAGATATGAAATGGAGGAGAGACCAGAAGTACAAAAACAGATTCTGCTTGATATTGCAAAGAAGCTCCCAGTGTTCACACGTGCAGCCTCTGGAGCGGTCAGGTTTTGCGACCGATGCCAGTTAATCAAGCCAGATCGGTGTCATCACTGTTCAGTCTGTGAAATGGTGAATAACTGTGTTTGCTTTTCGAACTACAAGTTTTTCCTGTTGTTCCTCGCTTATTCCATGATCTACTGCATCTATATTGCTGCAACAGTATTTCGGTATTTCATCAAGTTTTGGGCAGGCGAGCTTCCCAATGGACATGCCAAGTTCCATGTATTATTCTTAATGTTTGTTGCTCTCATGTTCTTTGTGAGTCtcatgtttctgtttgtctACCACTGCTGGTTGGTGGCTAAGAACAGATCCACGCTAGAGGCATTTTCCTCTCCAGTGTTTCAGACTGGGCCTGACAGAAATGGCTTTAATGTTGGCTTTCGAAAAAATCTGCAGCAGGTGTTTGGAGAAGACAAGAAATACTGGTTCATACCTGTGTCTTCCAGCCTGGGTGACGGCCACTTCTTCCCCATGCGGTGTGTGAATGAATCCCGAAATCCTCTGTTAGCTAATGAGGAGCAGTGGGACGAGGGGGGATCGGATGAAGAGAGCTCGGGGGAAAAAAGTCTTAAAGACTGTTAACTAAAACAAGAGGAGAAATGAAAGGTACTGCTTTAACAGTCAATTTAAGTTGACGCATTCCAGCTACTGAACATTTCCAAGCAACCCTTAAGAAGAAACCAGCTGAGTGTTGAAGAACTGGTGCAATTCAAGTATTCtattattgctgtttatttttaatccagttttatctgttttttatattactCATGGGAACAGGACAGGTTTTTCTTGAGCAAGGGATGCTGTACAATATCCTGGATAAAGGCATGTGGCCTTCACTTTGTCATAGGCTTGCCCAAGAATTGCTTTGACTGCATCTGAAACGTTTCTGGATCCAGAGAGAGAATAGAAGAGCAACAGTATTTCATACCTCAGCTCAAACAGTCGTTAACTgatatttcatttgtttcagaaaTCTGATTTGCCAGAGTTGAAATTGCATTTGAAGTCGCATTcctgctttgaaaaaaaaaaaaaaaatcttattttccACTCAGCGTGCATCATATATCACGCATCCTCACTAGCAGTTTACTATGTGAAGAGACAGGGAATTCATGCAGTTGGGACTTTGCTTTATGGTGATTTACTAACCTTGCCGTGTATCTGTGGGCAGAGAAATTTGTCTAGACTTTCCAATGATTCCAATGAATGGTATGAGTCACTTTCAATAGTGAAATGCTTTTCCAAATTAGGATTAAATACAGCTgttataatattgatatatttttaatatattttttaaatcacttaacTATATATCTGATAAAACAAGATGTTTAGGGGTTACAGTAGGCATTGCCTGAtaaacagaattacatttttacatgcaAAATTAGTTATATACCAGTTAAAATATTTGAGTGGATTACTCTTCTCATTCATGAGGTACTAGCTCTGGCGTTTGTACGTGATATACTTGTAGAGTTTAATGTTTACTTGTGTACTCATGGCATCCACAATAATGATGATGGTGTTGTTTTAACAGTAATTTATAACAAGTAAAGGATAATTGTATTACACAGTAGCTGTATTGTAGCTGCTGACTAACATAGTCTTATGTTATCTCTGCCACTTCAGAAGAGTAGGCTTTTGTCAATCTTCATGGCTGTCTGGAAGAGACTGATTGGGAGGGgggttaataattaaaaaaaaaagtcagtggGGTTTTTAGTCAAAACTACAGGGTCACTAATCATTGATGGcttgaattaatgttttaattaagctaAAAGGTAGCATAAAATATACCAAACCACTTACAACTGCTTTACACATGGATATCTAACTCCATATTTACTCagttttaaaactgttatttatACTGGACTTTATatggtgtatttgttttgatgcTTGTAAAGTAATTTACCTGGTGTTCAAGTATGCCCCTCCCTCCaacaaacactttattttattaccttgtttattttgtgacagtgtgtctgtattactGTACTTGGACTAATTGTACTGtaccacatttgttttctgcttcattttcctcaagattaaatgtttttttgggggaTTTCTCTATCACTAAATAACATTTGTACTCCAGTATTCTATAAGAATATGTTCTGAAGATATCTAAAAACTGTGTGTTACTCTACATACCTGTAATTCagtctctgtgtttcagtgtacaTCTGCTTTACGTCATCGAGAATGCCGAAAAACTACCACTATCTAACGATCTTGATTTTGTTGTAATGCCCAGATTAGAACATAGGGTTCATGCTTGCGTTGGTGCTAAAGTTAACAGTTCTTGTGATAACCGTAATTAAAGTCCcctaataaatgtttaattttatcttaaattacaatgtctaaaaccttttatatacaaaataaaattaatgccAGAAAAGTCAGTCACATTGATGATTTGACCTTGTATGAATGTACAAGTGAACATAGTTAATGGAATACAAAAGGATAGAGACTGTGAAAGCACACTACAGTGCATAACTATTGTCCTCAACCAGGGTGAAACCTTATTTTAAGTAGcatattccttatttattttaatttaaaataaaaatgagtaaGATTACTGCTGTGGTAGATGGGTGGGTGGACTGCTAAGGGTTCCAACTCCTGTTATAGGGTCATACTGAGGGTGACTCCAACTATTCCTCAAAACCAACAAGCATTGTGTTACTGCACTGGACTTTTACCGAAGATGTCAGCCTTATTAGAACCTCAGTAATGTCACTTTTAAAGCATGTCCTGTATCTCTTAactcaaaataatgtttattaccTTTTGTctgtcataaaaatatataacattttccttttgtatgTATGTCAACACTTCTCATTTGTGAAGGTGGTATGTATAGTatctgtttcttgttttcagcAAAACCTACAAAgcttctttttatatatatgctttattgAAAGTcaggcagtttatttaaaatgtgatcatTCTGTTCAGGAAAGCTTCCTATTGCCTTCCTAAATCAAGATCCTACATTtgttacaaacaaataaaagctgTTGATTATACAATACTTACATAATGATGTTTTCTTAGTGCACAAGACTGTAGTATGATCTTCTCACTGCTTACTGGTTTTATGGAAATTGTATTGCAGAGGACTAGGTTGACAAATTCTCC

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016746 transferase activity, transferring acyl groups molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K20028 ZDHHC2_15_20; palmitoyltransferase ZDHHC2/15/20

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105443 lncRNA downstream 189393 10087704 ~ 10090475 (-) True G84514
TU105216 lncRNA downstream 1439209 8836275 ~ 8840659 (-) False G84332
TU105215 lncRNA downstream 1439209 8836308 ~ 8840659 (-) True G84332
TU105217 lncRNA downstream 1439209 8836308 ~ 8840659 (-) False G84332
TU105177 lncRNA downstream 1538455 8741161 ~ 8741413 (-) True G84311
TU105548 lncRNA upstream 118306 10413175 ~ 10414481 (-) True G84603
TU105563 lncRNA upstream 179548 10474417 ~ 10477459 (-) True G84614
TU105608 lncRNA upstream 547863 10842732 ~ 10843021 (-) True G84651
TU105624 lncRNA upstream 856117 11150986 ~ 11151438 (-) True G84667
TU105639 lncRNA upstream 1149962 11444831 ~ 11445148 (-) True G84682
AMCG00021230 mRNA downstream 6159 10227907 ~ 10273709 (-) True AMCG00021230
AMCG00021231 mRNA downstream 131999 10126555 ~ 10147869 (-) True AMCG00021231
AMCG00021228 mRNA downstream 175461 10094480 ~ 10104407 (-) True AMCG00021228
AMCG00021220 mRNA downstream 334692 9937604 ~ 9945176 (-) True AMCG00021220
AMCG00021221 mRNA downstream 399883 9864691 ~ 9879985 (-) True AMCG00021221
AMCG00021239 mRNA upstream 64972 10359841 ~ 10411701 (-) True AMCG00021239
AMCG00021237 mRNA upstream 128690 10423559 ~ 10438830 (-) True AMCG00021237
AMCG00021238 mRNA upstream 162728 10457597 ~ 10462464 (-) True AMCG00021238
AMCG00021236 mRNA upstream 232281 10527150 ~ 10551602 (-) True AMCG00021236
AMCG00021241 mRNA upstream 340476 10635345 ~ 10651673 (-) True AMCG00021241
TU104623 other downstream 3733291 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 5528633 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 7598106 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 7820489 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 8301900 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 2232224 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 2424995 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 3332466 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 3575070 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 3755105 14049974 ~ 14051897 (-) True G85115

Expression Profile