RNA id: AMCG00021244


Basic Information

Item Value
RNA id AMCG00021244
length 1458
RNA type mRNA
GC content 0.42
exon number 5
gene id AMCG00021244
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 11844509 ~ 11847471 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGGACTGGCTGCTGTGTCCATTGGAGAGCCACAGagtttctgtctctttctttcttttccaagGACATTCCTACCAATTTTTATTACAATGCTAATATCCCAGACAGAAACATGACATCTGAAACCCAAATTCACCAAACCTGCTACAGGCAGCTGGAGGATAATACTTTAGTGGCGAGACAGGAACGGACCTGCAACTGGAATGGCTTCGTTCTGGTTTTGAGTTTCTTGCTGGGAGCGGAAGTCATCGGGACATGCTTTCTAGTTTACGATTTAGCCAAAGAATTAGACCAGACACGGGATATAGTGAGGCTTGGGGAATACCCTGTACACTGTCTGCAGTACCTGGTGGATACAGAGGTGCAAGAAAATACCTCCTATAGCTCTGGAGATCCTGCCAGTTGTGACAAATGGATTATTGAAATGAAGAACACCATGAACAAGCAACTGATCTCTGATGTGAGAAATGCCCTCTATCGAGAGATGACAGCACACAATGTATCCCTGTCCCTCTACAACAAACCTGCTATTCACCTGGGACCTGAGCAAGGATGGAAACAGTTCCCTAAGTGGCTCAAGCAAGTAGACAGAAAGGGAAGCCCAATGAGGACAATCGTGGGAGACACTGTTCGTTGGGACAACCTCAATGGGGTGGCCATGCAGCAAAGCATGATGGGATACAGCCAAGATGGTGAAATTGTGGTACCACGTGACGGGCTGTACTTTGTTTACTCCCAAGTGTATTTCCGTTCAGGATCCCTTGTGCACCAGGAGCAGACCCAGCCTTTTCTACATATCATCTACAGGAAGACATCCTACCAGGAGCCCATACTACTCACCAAAGCTGCAGTCACTCAGTGCTGGAACACAGGACTTGAGTTTGATCTGTTTTCCAGCCACCAAGGGGCACTATTTCAGCTGCAGCAAGATGACAGGCTCCTCTTAAAAGTCCATGACATTCATCATGTGCATTTGGAAGAAGATTCAACTTATTTCGGGGCCTTTATggtacattaattaattaaatagttgCCAGACCAGAAGAGGTGAACTATTTCATCTTCTAATTAGAAGGGTGTTTTAACTGTCTGTCCTATTGTTGTTTTACATGGGTATGATTAGATTAGTGTTACATTGCCATGGGGGTCTTTTCTCCGCTATTTAATAGATTTGTCATATGAAGAGCATACAAATgagtattcatattttttgtacaaTGCTTGGTGATAATACATACATTCTAAAAATTCTTTTTCATgtattgaagaaaacaaacaagcatttttttgtatagaaAAATAGTTTATTGCTGAATGCatctttgtgtttaattaaaggaaatgtaCTTTAGCCAACACCATATCACCATAGTTGGAGAGTGAATTTAATTCCTGAGATGTATAGTTTGAGACAGAAGGCAAACTCGACAGTAGTAATTGAAGGACAATACcttcaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105648 lncRNA upstream 140509 11703795 ~ 11704000 (+) True G84691
TU105647 lncRNA upstream 152803 11691092 ~ 11691706 (+) True G84690
TU105638 lncRNA upstream 399359 11444831 ~ 11445150 (+) True G84681
TU105625 lncRNA upstream 674616 11169694 ~ 11169893 (+) True G84668
TU105623 lncRNA upstream 693071 11151176 ~ 11151438 (+) True G84666
TU105738 lncRNA downstream 253660 12101131 ~ 12101343 (+) True G84759
TU105792 lncRNA downstream 489331 12336802 ~ 12337139 (+) True G84801
TU105794 lncRNA downstream 490526 12337997 ~ 12338207 (+) True G84803
TU105821 lncRNA downstream 953358 12800829 ~ 12839209 (+) True G84825
TU105833 lncRNA downstream 1208711 13056182 ~ 13061763 (+) True G84837
AMCG00021245 mRNA upstream 24939 11792238 ~ 11819570 (+) True AMCG00021245
AMCG00021247 mRNA upstream 314038 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021240 mRNA upstream 1125182 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021235 mRNA upstream 1422105 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021232 mRNA upstream 1488526 10344129 ~ 10355983 (+) True AMCG00021232
AMCG00021254 mRNA downstream 258843 12106314 ~ 12107507 (+) True AMCG00021254
AMCG00021248 mRNA downstream 283724 12131195 ~ 12143466 (+) True AMCG00021248
AMCG00021255 mRNA downstream 338538 12186009 ~ 12195780 (+) True AMCG00021255
AMCG00021256 mRNA downstream 594744 12442215 ~ 12449758 (+) True AMCG00021256
AMCG00021262 mRNA downstream 1510787 13358258 ~ 13377435 (+) True AMCG00021262
TU105614 other upstream 857335 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 2421090 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 3211099 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 4723272 7115381 ~ 7121237 (+) False AMCG00021150
TU105723 other downstream 227874 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 4216129 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 4742710 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 4809173 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 4809173 16656644 ~ 16714038 (+) False G85787

Expression Profile