RNA id: AMCG00021245


Basic Information

Item Value
RNA id AMCG00021245
length 6399
RNA type mRNA
GC content 0.49
exon number 10
gene id AMCG00021245
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 11792238 ~ 11819570 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTTCTCTGGGTGTCATTTCTCCCTGGGCTTTGGCTGCCCTGGTCCTTCTGCTGCCATGGCCTCTGATTGGGCATGCCTGCCCCCAGTCTTGCAGCTGCTCAAGTCCCAAAGAAGTGCACTGTACCTTCCGCCATCTCAGCTCCTCTCCACCCAGCCTGCCTCGAGACACAGAGCGCATCAACCTGGGCTTCAACAGTATCCAGGCTGTGGGCGTCTCGGAGTTCGCAGGCCTCAGTCGCCTGGAGATGCTGATGCTCCATGGGAACAGTATCGATTCGGTTTCCCCAGGGGCCTTCCAGGACCTCCACTCCCTACAGATCCTGAAGCTGAGCTACAATAAGCTGAAGAAGCTCAGCTCGGGGATTTTTAAGGGGCTGTCCAGTCTAGTGCGTCTCCACCTGGACCACAATGCCATTGAGTTCATAGAGCCCTTCTGCTTCAGCGGACTGACGACCCTCAAGTTGCTACAACTGGAAGGGAACCAGCTTAGAGATGTGCACCCTAACACCTTCATCACTCTCTCCTTCCTGGGGACCTTCTGGGGCTCTAGTCTGCGCCACCTGTACCTCTCGGACAACAAGCTGGAGAACCTCCTACCTGGAACTCTGCAGCACCTGAGCAAACTGGAGGTTCTCTACCTCCACGGCAACCCCTGGACATGTGATTGCCAGCAGCGCTGGCTTTTAGAATGGAACAAGAGGAGCCCAGAACTCTCCTGTGACAAACCGGTTCTCCACTCTCCACTCAAGCTGCAGAAAAGCTCTAGCTGGGAGGACCCAGAGCCTGAACCTCTAACTGTCCAAGACTTTGAGCACCCGCTTGGACAACTCACCTTCATGTTGTCTGATAACCAGGAGAACATGGCACATGTTGCCTGTGCTGTGAAGCATCCAAATGAAGGCACTTCCATGGGCTGGGAGAGCTCAGGCATGCCAGGGCAGATAGCTGTCAATGTGACTTTAATAACACTGTTGGAGTGTGACATTGAAAAAGACGAGCTTCAGAAGCTCTGGAGACTCATCGCATATTACTATGAGAGTCCTGCTGTCCTGGAAAGGGGCCTCCAGCTAGGGAACACTTCCAGGACTTCTTTTCAATATTCACAAGTAGCGAACGATGATTCACCTTACTTTACAGAACTCAAGGGACATTTACTCGCTGAGCCAATATGGCTGCTGCAGCCCCGTATAACCCTCCAACTCAACAGACGCAAAACGACCACCAAAAAACTCGTACTCAACTTCACTACCTTCATCTCAAAACAAATCAGGATCTGGGATGACCTCAGAACTTCTACACCCACCTGGATAATGATACAAAGAGGGGCGCCGGGGAGGGTGCAAACCGTTTTGGAAGGTTCTGAGGTCACTCTAACATGCAAAGTGATTACTTCTGGAGAAGCAACCTATGAGTGGATGCTCCCAGATTTATCAAAGGCCAACAGTTCTCATTCACGACTCGTGTTGTCTGATGAAGGCAAAATGGTTATAAACCCTGTAGCTGTTTCTGACTCTGGGCTTTATCACTGCCTTGTTCAAACAGAGAATGAAGTGGATTTAGTACCTTTCAGGTTAATAGTACGGGAACTTCTGCTCAGTCCAGACAGTCTAAATGGCAAAGAGGTAACTATACATAGTGGAGGGTCATTCACTCTCCCCTGTTCGATCTCTTCCGTTCCTCCCAGTAGGATCAGTTGGTATCTTCCCAAGAATAAAATTTTACTTCAATCAAATCCGAGGGAGAGGGTTTACATGTCACACAATGGGAGTTTGCTAATCACAGAAGCAACCCAAGAAGATGCTGGAGAATATAGCTGTTTGGCTGCCAACCTCTATGGAGCAGACATGCTTTCGCatctaattttaattgaaagtggAACAAATACAGTTCCACCCAGTGTGAGTGAGACTGTCAAAGAGTCAACTGGTGGCATTTCTTATAAGAGGTACCAAGCAACAGAGGAGGATGAAGAAGAAGGTTCTGGAGATGTGAAAATTGAGATcagacaatcaaaccataatgAGGTACCTGACAGGACAGGCCTACAACATGGGGGCAATAAGGCAAGAAAGGTCTGggagaagagaagaaataaCATGTCTGTGAAAGAACTGGACCCTAAGCGTTGGGCTCTGATTCTTGCAAAAGCTCATGGAAAGACATCTATTGACACTACAACTGACACTCCAGAAAGAGAGGGTAGTACACAGGGTCTCAAGATGTCTACATCCTTCATCTCAGTGAGGacagaaaacacagcagaaaatgaATTTGAACTTTTGCAACCAACTCCAACATTGCAGCCTACACAGGTACCAAAACTGTTAACAACCAGTGTTTACCATAGAgagtcaaatgtattaaaaaaagttgtGGCAACACCTGTCACACCTATGGCAATTCCTAGTACAAAACAGGTGATAGAGCCTGTGGATCTGGAAAATGGAGTCAATGTTGCTGAGAAGACCAAAAATGGCCATCGGATCCCTCAACAACACAACCAGAACCAACAACACCAGCCTTCCACCACCACCTTGCCCTGGTCCCACCATAACCATGTACCTGTGAGGCACACTGCTCACAGCCCACGGCATTATCCTTTCTTTCACAGCAGGGCCTGGCCCTTTCCATATCCAGGGGCCAGGGACCTTGCAGTTACCAACCGTCCTGAAATTACAGCACTGACTGCCAAGTCTACTGTCTTGCTCTTAGTAACAACTTCCCCTGTAAGAAACAGGAACCTGAGCTCAGCCTTAAAACCTCTTCTCGACAATTCAGCAAGCAGAGGCAGGGACCTTCTTCTGCTGTCTCGGCTGCGGAACAAGTACAGACAGCCCCACCTGGATTTTTCCCATCTCTCTCAATATGGAAAAAGTGTAACATCCCCACCAAAGGTCATTCCCCCTACAGTAAAGCCACGTCAAGCTCCCACTTCATCAAAGCATTACAGTCCAGTCACTCCAGCTAACCCAGCTCTTCCATTAAGCACAAACAAACCTTACTCTACTGcaagtgttttgtttggcaGTCACTGGCATTACAATCACTGGACTCCCAGGAAATTAAGTACAGCCCTGCCATTTCCTAACCTGATGGGCAGTGGAGTGAAGCCAAGAATCGTGTCTGTGAATGTAGTCAGCTTATCGGCTCTGGCAGAGACACATGTTTTCCTGCCCTGTGAATCATCAGGAAATCCCAAGCCTTCAGTGTCCTGGACCAAAGTCTCCACAGGTGCTACTATTCAAGCGAACACAAAACACGGTCAGAGATTTGAGGTATTACAAAACGGTACTTTTGTGATTAAAAATGTTCAGCTGCAGGATCGAGGTCAGTACCTCTGTACAGCTCAGAATACATTTGGATCAGACCGAATGGTTATCACCCTTGCAGTAATGACACAGCCTCCAAGAATTCTACCTCCAAAATCAAAGGAAGTTTCTGTTTATTTGGGACGCCCTGTAATCCTGGATTGTTTGGCAGAGGGAAAGCCGCAGGCACAGACCTCCTGGATCCTGCCCGACAGGACATTTATCCGCAGTGTTGGGCTGGTTGACGAAAGAACCACACTTTTCATCAATGGAACACTCAGGATCCAAACGGCCAATTTTTCTAGTAAAGGAGATTACAAATGCATTGCCAGCAATGCTGCTGGTGCTGACACTGTAACATACCACCTCCATGTTGTCGCTTTACCACCTACTATCAATGAAGAAGCCTCTGAAAATGTTGCATTGTCCACTGGCCGCAGCATTTATATCCATTGCACAACCAAAGGTGAGCCCTATCCTAGCTTAAAGTGGACACTCCCTGGGGGGAAGCAGATGAAACCCTCCCAGTTCCTTGGAGGAAGAATTTTTGTCTTCCATAATGGGACACTCTATGTCAAGAACATTTCACCAAGTGATTCTGGGAAGTATGAGTGTACTGCCACTAACACTGTAGGCACCAGCAGGAGGGTGGTACAGATAGTCATCAAACAGGAAGCCCCCAACCCCAGGCAGAACCCATCACAGAAGCACAGAGTCTCAGCTATGTATGGGTCCACTGTTTACTTGCACTGCTCAGAgtctacaaacacacagaacagagCACTATGGACGCTACCTTCCAAAGCAGTTGTGGATTATAATTACAGCCCTGACAGACAAATTACAGCATTCCCTAATGGCACACTCAGGATCCAGCTGCTGAGCGAACAGGACAGTGGTGATTACCTCTGTATGTTCCAGAGGCTCAACGGTCAGGAGATAGAGCAATTCCAGCTGGAGGTCCTTATGAAGCCACCAAAAATCAAACCCACAGGCACTGCCCAGAAGAAGGTCACCTACGGGGAGAACTTCCAAGTAGACTGTGTGGCTTCTGGGCTTCCAGATCCCGAGGTAAGCTGGAGCCTGCCAGATGGCACCATGATTAACAATGCTCTCCAATCAGACGACAGTGGGGCCCGGTCTCGCCGATATGTCATCTTTGGAAATGGAACCCTATTACTGCAGCAGATGGGGATGAGGGACGAGGGTGACTATACATGCTATGCAGAGAACAAGCTGGGGAAGGATGAGATGAGGGTCAACGTCAAGGTGGTCCCAGACTCTCCCAAGATCTCATCTAAGGAGCAGACATCCCTCTGGGTTCAGCTTGGCAAGCCTGCACACTTGAACTGTGAGGCCACTGGGGATCCCTCCCCCACCATTATATGGCTTTCCCCAAGCAATGAAGTCATCACATCTTCCACCAGCCGATACCTGGTCATGGGAGATGGAACCCTGGTTATCAGGAAAGTGGGAATGGCTGACCCAGGTACATACGCTTGTGTTGCCAGGAACTCAGCTGGTGATGACATCAAAAATGTAAAGCTGGAGGTGGAGGGCAAAGAGCCACGGATTAACAGACAAGGGGGAAGGAGCGGTATGAAAGTGTCAGCAGTATCGTATCAGACCAAGATGCTGGACTGCAAGGTAGATGGCATCCCAGAGCCAAACGTTAGCTGGACAACCTCTTATGGCATCACCCTACCCACACCTTATTTGGGTGGCAGGTTTCAAGTTCACAGGAATGGAAGCCTGGAGCTTAGAGGACTCAGGAGATCAGATGCAGGTCAGTTTGTCTGCTTGGCACGAAATGAATTGGGAGAAGCGAAGCTACAGGTTGAACTTGAAGTGGGATCTACGGCGGAAAGGCCAAGTTTCCCAATACCTCACAGCGAGGCTATTACCTTCAGATCAGACCGCAGCGAGATTATTCTACAATGTCCTGCACGTGGGAAGCCCACTCCGGATATCTCATGGGTGCTGCCCAATAGTACTGTACTGGCTCCAGGCACCAGACTTCAGCGCTTTCTTCACTATACAGGCAATGGGACTCTGCGTATAATGCGACCACTCATCACTGACACAGGGAGCTACCGTTGCTTGGCAAAAAACATGGCTGGTCAGGTTGAAAAGGTGTACGTCTTAGAACCAGGGAGAAAGCCCCAGATACGTGGAGCAACAGGAGTTTTCAGGATTTCATACGGGCAGAATCTGAATCTCCACTGTGCTGCTGAAGGTTGGCCACAACCAAGCATCTCCTGGACTTTACCCAATGGCCTGGTCTTGGACAAGCCTCAGGTCATTGGAAGAGTGACTTATTTAATAAATGGCACACTCCAACTTCGAGAGACTGCTACTTTTGACAGAGGAACCTATATCTGTAAGGCTACAAATGCTTTTGGCTCCTCAGCACTCTCAGTCCCTGTTGTAGTAATGGTATACCCCCCACGTATAACCAGTGGACCCCCATCCATCACAAGAGTTAACAGGGGCTCCACTATAAAGCTCAACTGTATAGCGGTTGGTATACCCAAACCAGATATCTCTTGGACTCTACCAGGTCGTACTACACTGGTTTCAAGCAATCGATTCGCCACACAGGGTGGCATTCACATGACCACTGAAGGCAGCCTGGTTTTACAGAACCCAGTGTTAATGAACTCAGGGATTtataaatgcaatgcaaagaATGCTCTGGGAATGGACTTTAAAGCCACTTACCTCCAGTCGGTGGAGACGGCAGGCGCACTTTTCTCGGGCTTCACAGGCTCCAGCTTCTTCTCTGGCTCGGGGGGAACGGGGGTCGGGGGCTCTTCTTCCTCGGGGGGCAATGGCAGGGGCTCCAGTGCCACTGCTGATGATATCCAGGAGCAGTACTGCCCACTCAGTAGTCTGCTGTGTGCTGCGCTGTACCGTATCAAACATGCCACCCACCTGCAGGGAAACAAAACCACAGACGAGGACCCCAGGTGCTGGcccttctccagctcctccccTGCAGCCTTAAGCACGTGGCCCTGGACAGAGGTGGGCAGCTTAGCTATCAGAGGTGCCACCAGCCAGACCCCGGACCGCTCCGATGAGCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105648 lncRNA upstream 88238 11703795 ~ 11704000 (+) True G84691
TU105647 lncRNA upstream 100532 11691092 ~ 11691706 (+) True G84690
TU105638 lncRNA upstream 347088 11444831 ~ 11445150 (+) True G84681
TU105625 lncRNA upstream 622345 11169694 ~ 11169893 (+) True G84668
TU105623 lncRNA upstream 640800 11151176 ~ 11151438 (+) True G84666
TU105738 lncRNA downstream 281561 12101131 ~ 12101343 (+) True G84759
TU105792 lncRNA downstream 517232 12336802 ~ 12337139 (+) True G84801
TU105794 lncRNA downstream 518427 12337997 ~ 12338207 (+) True G84803
TU105821 lncRNA downstream 981259 12800829 ~ 12839209 (+) True G84825
TU105833 lncRNA downstream 1236612 13056182 ~ 13061763 (+) True G84837
AMCG00021247 mRNA upstream 261767 10993784 ~ 11530471 (+) True AMCG00021247
AMCG00021240 mRNA upstream 1072911 10470063 ~ 10719327 (+) True AMCG00021240
AMCG00021235 mRNA upstream 1369834 10382430 ~ 10422404 (+) True AMCG00021235
AMCG00021232 mRNA upstream 1436255 10344129 ~ 10355983 (+) True AMCG00021232
AMCG00021233 mRNA upstream 1513087 10274489 ~ 10279151 (+) True AMCG00021233
AMCG00021244 mRNA downstream 24939 11844509 ~ 11847471 (+) True AMCG00021244
AMCG00021254 mRNA downstream 286744 12106314 ~ 12107507 (+) True AMCG00021254
AMCG00021248 mRNA downstream 311625 12131195 ~ 12143466 (+) True AMCG00021248
AMCG00021255 mRNA downstream 366439 12186009 ~ 12195780 (+) True AMCG00021255
AMCG00021256 mRNA downstream 622645 12442215 ~ 12449758 (+) True AMCG00021256
TU105614 other upstream 805064 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 2368819 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 3158828 8631727 ~ 8633410 (+) True G84301
TU104813 other upstream 4671001 7115381 ~ 7121237 (+) False AMCG00021150
TU105723 other downstream 255775 12075345 ~ 12100707 (+) True G84749
TU106850 other downstream 4244030 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 4770611 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 4837074 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 4837074 16656644 ~ 16714038 (+) False G85787

Expression Profile