RNA id: TU105737


Basic Information

Item Value
RNA id TU105737
length 3186
lncRNA type sense_over
GC content 0.38
exon number 6
gene id AMCG00021249
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 12093477 ~ 12100854 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTCTCGTCGACGGCAGGTCTGGGTGGGGGAGGCTGGGCGATCTGTCCCGGTTCGGTCTCATTAAGATCTGCAGCGATATTTATTGCTATTGGGGGATTGTTTACAGTACACGCAGGGCATCCCCTTACCCGGGGTGGGATGGCGGAATATAGCCAGGCGGGTATCTTGACGGCATTGCTGCTGTTCACGGTAGTGACTGTGCGGGATATCTATATGGGAAAGAACCTggctcagcagcagcagcaggccgCTGATAGCCTGGGCGTAGGGTCGGGCGGCCTGCGGGACATGGACACTCACAAGCCGGCCAAGCAGAAGATGTACACCGGCCCAGTGCTGAAGTTTCAATTCTGCATATCCTGAGGGTACAGTAGGGTGTTCGAGGAGTATTCACGGTCTATTGGCCAGTTGTACCCGGACATCCAAATAGAAGGCGAGAACTACCCTGCCAAGCCTATATACAGATATATTGCATCTTTCATTTCCTACTTTAAACTTCTTGCAATTGCGCTGGTTGTGAGTGGGTATAATCCCTTTCCTGTACTTGGAATGGACACTCCAAGAATATGGACATGGAGTCAAGAGAATaagATTTTTTCCTGTCTCATGACATTTTTCTTCAGCAACATGTTAGAGACCCAGTGCTTATCTACGGGTGCTTTTGAAATCACACTGAATGATGTACCCATCTGGTCGAAGCTGCAGTCGGGATATGTGCCTAACATCCAAGAGCTTTTTCAAATCCTGGATAATCACCTGAAGATGAATCAAGTAGACAAGATCTCCTTTCCAACTCCATAACATTGGTTTTCAAACAGACAGATTAGCAGCCGGAGCAGGTTTCCCAGATCTGTGGGATTGTCCTGTGGTTTAATGAAGGCCTGCGCTGCAAACAGCTTGCTGTGAGTACAGGCTGGATGTCCCCGCCACAGTGCACACTGCTGCAGCTCTAGGAAACGCTCCACCTGCGGAAATCAAAACCATACATAAAGGCAATCATCTCGCTGGACTGCTATTacagcatttccaaaaagaaaaagaaaatgataatttgattaattctcCTTGGACAGCCTCTTCAGTGAAAGTTAACATAATCCATTTTGCAGAGCATGATTTTCTATTTGTCATATACATGTGGGCCAAGGTGTATGTGCTTCATTTTAATCATCTTAATTTTGTTATTCTTGGGAGAGGATCTGCAAGttgttaaaggaaaaaaaaagttctagCTGAATGTTAAAATTTGCTTGAATAGGTGAAATTTATGTTAGTTAAGTTAAAGTATGACTCAGGTGTTTATTAAGTTTTACCTTTTGCGGTAAAAGGTagtgtttatttcagttctATGTTCTTTCATATATTGCTGTTCTGAAATCTATTCAACTAGCAAAACAGAAATTCTCATCTCCTTGATGAATACCTCACATCAGAATAACTTTTAGAAGGGGGATGTGTAAAACcactatttaattaaactgttggAATTCCAAAATGTtcctgaaatgtatgtttataaatTGCCTGTAATGAATCTGAGCTATGTTGCAATTAATTGAAACACTCCCAGGAGCTCAAAATGTCAGACACTTGAAaggcatattttaatttgtaaaattttCTGATCCTGGAGGCCTGCAATGTCCTTAGGTTTTCATCCATCTGAACTGTGTAAGTGTATTCACATATATGTTGGCTAAATTCAACCAATATTATTCTTACCTTATTTTTAAGCTGCTAATCATTCAAAAAGCTATAAAACCTCCTGTATTGctgccctccaggaccagagttgtGCACTCCTGATCTAAGTCAATAAAGTACATTAGTTGAAAGTGTTCATGTTGTTAACTTTGTTGCATTATTTCATCTGTTAGTGCTACatgaatcaaatcaaaactttgtccCTGCCATCTCTGCTGAAGAAGAGACATACAGTCTGTCCCACAGCTGCTTACCCATGGTAGAAAAGTCcactgttaaatgttaaaaatgagaACTCTTAACTGGGTTATACACAGCCCAAGAGgtttttaaaccattaatttgcattttaaatttaaactggtAATCTGAACAAGTGTAATGAgttaaatgtcttaaaaatgtgcacatttattttgcGGTCTTTAAGCAAGcattgtgacacacacacacacacactccagttCTGTATCCCACCATATTACTCTTAATTTACATACTTTATACATTATCCATTAAATAAACCCTCTTGGATTCCCTTTGAAAAACTGTCAAGTTATCAGATGGGACTATtctataaattacttttttccctagGCAGAGATGCTGGAGCCTGGTGCCTCTAATTAATGATGTGCGCTGTCACAACTTTTTGAAACTGCAAAGGGTTTGAAGATTATTTCTACATGCATTCAGAGAATAGAATTTCAAGAACCCATTAGCCAGGCATAACAAAGATGCACAtcactgtaaactgtaatttaagTCAAGCTTCATAACTAGAGCTTTATCCAGGGTATGTTCTTTCTATTAATTGGTAGATGCTTGTcaattttcataataaaaaagtcTCAAATTATcagactttttttaaagatgaggGGAATCCAACCCTATGTTTTTTCTCCTTATTAAGAAATTTGATCTGGTTTAAAAGCTTCAAGCAATGCTTGTCTGTATTATACTAATCCCAATTGTTAAAAACTTATTTGAACAGAGCTTAAATTGCATGTACTATATTAGTAATTTTTTTCTTACAACAGAAAACCaaaattctgtattttgttaatgtctCTGTGATACAagtaatgcaataatgaactaTGAATACTAACACAAAGGCATGTAATCCTAAATCCCTTGTAACCTCAATTTCCAATTTGATTTCATATAGGAAATGTAGTTTAGTTGATGTGGGGTGTGAATGTGGGGCAGGGCATTAATGGTATGAAACTGATCCAGTCTCTCTCACTATCCGTTTAACTTATGAAATGaccattaatgaaaaacaccCCAGAGTGATTTgctgattttgtgttttattcttttaatttttgttgttgctgttattaataAATTCCCCCTAGTGAACATTGACAGTTGTTACATGTGGTTTTCATATGATAATACAGAATAAACATGGTGGAGAAGGGGTGATTGTAAACTTGGATGAATGTCCCTCAAATTGAGTAATGTAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105649 lncRNA downstream 389515 11703779 ~ 11704012 (-) True G84692
TU105639 lncRNA downstream 648379 11444831 ~ 11445148 (-) True G84682
TU105624 lncRNA downstream 942089 11150986 ~ 11151438 (-) True G84667
TU105608 lncRNA downstream 1250506 10842732 ~ 10843021 (-) True G84651
TU105563 lncRNA downstream 1616068 10474417 ~ 10477459 (-) True G84614
TU105739 lncRNA upstream 442 12101146 ~ 12101365 (-) True G84760
TU105760 lncRNA upstream 30598 12131302 ~ 12133157 (-) True G84778
TU105763 lncRNA upstream 41256 12141960 ~ 12143363 (-) True G84780
TU105774 lncRNA upstream 98073 12198777 ~ 12202827 (-) True G84785
TU105803 lncRNA upstream 399536 12500240 ~ 12503502 (-) True G84812
AMCG00021251 mRNA downstream 161730 11884997 ~ 11931797 (-) True AMCG00021251
AMCG00021250 mRNA downstream 222016 11847323 ~ 11871511 (-) True AMCG00021250
AMCG00021246 mRNA downstream 250109 11807293 ~ 11843418 (-) True AMCG00021246
AMCG00021243 mRNA downstream 1107025 10983956 ~ 10986502 (-) True AMCG00021243
AMCG00021242 mRNA downstream 1363914 10720148 ~ 10729613 (-) True AMCG00021242
AMCG00021253 mRNA upstream 21516 12122220 ~ 12126845 (-) True AMCG00021253
AMCG00021252 mRNA upstream 26379 12127083 ~ 12130937 (-) True AMCG00021252
AMCG00021257 mRNA upstream 106634 12207338 ~ 12224308 (-) True AMCG00021257
AMCG00021259 mRNA upstream 666917 12767621 ~ 12789334 (-) False AMCG00021259
AMCG00021260 mRNA upstream 809863 12910567 ~ 12916125 (-) True AMCG00021260
TU104623 other downstream 5546950 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 7342292 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 9411765 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 9634148 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 10115559 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 426389 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 619160 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 1526631 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 1769235 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 1949270 14049974 ~ 14051897 (-) True G85115

Expression Profile