RNA id: AMCG00021252


Basic Information

Item Value
RNA id AMCG00021252
length 3204
RNA type mRNA
GC content 0.46
exon number 3
gene id AMCG00021252
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 12127083 ~ 12130937 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTATTTCAATGTCACATGGACATAGAAAGCGCATGAGTTGAGGTTTGCTTGGAGTGATTTACTTTCAGCTCTGTACAGTAtgtcaatataatttaaataccaAGACTGCATTTACgggctttattttaattggaaccACGCTCAAGTAATGTACTTTACTTTTAGTTCGTGCACCGGATAACGTCGATATATGCCATGTGCATtcagaagaacaaaataaaaatgactgcaatgaaattattttccaatggcaaatatgaaaactgtgaaaacacTGAACTGAATATATGAATTGCATACGGGGAAAAATAAGCATCCGTTCTAACACAATTTGATAAACTCAATCAATTCAATGACCCTGCTGTAGTTGATTACGTTTGAATGAGATTactaaaatatactgtatttagcCAGTCATAATGAAACTGTATCGTCTTTGCGTAATGAGAAGCTTTGGTTGTGTTAAGGTCACAAACTGGCTCTCCTATTGGCATGTGTCGAGAAACGGGGTATTTTCCTCCTTTCCCTGCCAAACACgatttcattcaaaatgttcGCGGATTCAGGAAGTCACCGCTAGTTCTCACAACGAGGACTTGTATTATATCACCACTCCGATATTTTATGTCAACGCCGCTCCCCACATAGGACATTTATACTCCGTTGTCAGTGCAGATTGCCTTCACAGGTACAAACTGATGCGTGGGTTCAAATCCATGTTTTCTACAGGGACAGATGAGCATGGTTTAAAAATCCAACAGGCAGCAGAAGTGGCAGGAAAAGACCCACAGACTTTCTGCAATGAAGTATCTGAGAAATTCCAAGCTCTGTTCCAGCAATGTGACATTTCTTATACCGACTACATCAGGACCACTGAGCCCAGGCATCGCCATGCTGTGGAGCATTTCTGGACTGCCTTACAGGACAGGGGCTTTATCTACAAGGGGAGCTATGAGGGATGGTATTCTACACAGGATGAGAGCTTCCTGACCCCCTCTGAGGTGCACGACAGCACAGACGTGGATGGAAGACCAATAAAGATATCCCTGGAAAGTGGTCACAAGGTGGACTGGATGAAGGAGGATAATTACATGTTCCGCCTGTCAGGGTTTCGGTCCATGCTGCTGAAGTGGCTAACAGAAAACCCACGGGCCGTGCAGCCTGAGCGATTCCACCACCTTGTCCTTCAGTGGCTGCAGGAGGACCTGCCAGATCTCTCTGTGTCCCGCCAGAGAAGCCGGCTCCAGTGGGGCATCCCTGTGCCTGGTGACCCAGAGCAGACCATATATGTCTGGCTTGATGCTCTGGTCAATTACCTGACAGTGGCTGGCTATCCTCAGGGCCATTCTCGGTGGTGGGCTGCTGCTCATCACGTGGTGGGCAAAGACATCCTGAAATTTCACGCCATTTATTGGCCAGCATTCCTCCTGGCAGCCGGACTTCCCCTTCCCAAGGCTGTATACGTGCATTCCCATTGGACAGCTGGAGGACAAAAGATGTCAAAGAGCCTGGGGAATGTGGTGGATCCCCTAGAGAGGTCCCAAAGCTTCACTACAGACGGGATCAGGTATTTCCTCCTCAGGCAGGGTGTCCCAGACACAGACTGCGACTATTATGATGACAAAGTGGTGAAGTTGCTCAACGCAGAGCTGGCTGACTCCTTGGGGGGGCTGCTGAACCGCTGCACAGCCCCCTCCCTCAACCCTGAGCAGGTATACCCCAGCTTCTGCAGCCTGTCCTTCCCCAGAGAGCCAGCAGCTGGGGGCAGTGAGAGCTGGACTACCCAGGAGGACTACAGGATGCTGGAGAGTGTGTCAGGGCTGCCAGGGGTGGTGGAGACCTGCTTTGAAAACCTGCAGGTTTACAAGGCCCTGGAAGCCATTGCCGGTTGTGTGCGACAGACCAACGGCTTCATCCAGAGACACAAGCCATGGAAACTGGACCGCTCACAGCCCCAACAGCAGCGCTGGCTAGACACCATCCTCCATGTCTCCCTGGAGTGCCTCCGGCTCTATGGGGCCCTCTTGCAGCCAGTGGTGCCAATGATTGCCGACAAGCTCCTCTCCAGGCTGGCCGTtgggcacagagagaggggctgGGAGGGGCTGAGGTTCCTGGCACGGCACCATGGTGAGAGCTGCCCTTTTGAGGGCCGGGCGCTGGGCCCTGACACCGGGGTCCTGTTCAGCCGACTAGACAGGCCTCCCAAGGAAGAAAGAGAATCCAAGAAGACTAAGAAAGCCACAATTAACCAAAAAGgctcaaattaaaaagtatatataaaaatagagaTTGCAGCAGTTAAGTATTTGTTGATGTAATGTTAATAAACACTGTCTATATGAAGAGAAAAGGGTCAAAGGTACATTGTTGGATGTTCACTTCCAAAATATAATAGAAGCAGGAACTCCTAAACTATTGGCTTTGgtgtgagtttttttgtttgttttttactaatggaaaaaatcaaaatgtacCAGGTTTTCCCTGTAGTCAGCCAGTGTGGGTCTCCCATGTGCTTGCATGTTTGTGGATGCATATGTCTGTGAGTCACTGCAAAAGGTTATTGTTGCATGTAATAACTGTCATTAGTAGCTATTTTTGGATTGCtacaaaacaatttgaaaatctGGAGGCTGCTTTGTTATATGTATTGGTTCTGAAATGCCTGTGGTATAGCTCATATCGACTCCCTGTGGTCAGACTATATTTGTATGGATTTGATACATTAATTCTAGGTACATACAAGTACATCAGACAGCTACcttcagaaatgaaaataagacGCTCTTGTTAACACAGAGAGTTGCAGCTCGCAGGTGTATTGAAAAGGTAACCAAGCCACATCATAGAAGCTGATTCTTGAAGATCCTTCAAGATCCTTTGGACTGATGACAAATTGGATCAGTAAGCCACTGAGTGGGGGggcttcttatttatttgtttatctgtttgtattgtttccctttaatattgttttctccctttctcagGTTTACAAAGATAATTACAACAATTCTTCTGGGTGTcgttgtttgttagtttttttaacttgtttttgaCCTGTTGTAGAACAGgacatttctaaaaatacttAAGTGATCTAAATGAAAACTACTGTTGCGTATTTCCCTCGATGCTGcgtttttataatttatacttTGCAACGTAATGAtggcaataaaaaagaaacccgTACACCTG

Function

GO: NA

KEGG:

id description
K01874 MARS, metG; methionyl-tRNA synthetase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105739 lncRNA downstream 25718 12101146 ~ 12101365 (-) True G84760
TU105737 lncRNA downstream 26379 12093527 ~ 12100704 (-) False AMCG00021249
TU105649 lncRNA downstream 423071 11703779 ~ 11704012 (-) True G84692
TU105639 lncRNA downstream 681935 11444831 ~ 11445148 (-) True G84682
TU105624 lncRNA downstream 975645 11150986 ~ 11151438 (-) True G84667
TU105760 lncRNA upstream 365 12131302 ~ 12133157 (-) True G84778
TU105763 lncRNA upstream 11023 12141960 ~ 12143363 (-) True G84780
TU105774 lncRNA upstream 67840 12198777 ~ 12202827 (-) True G84785
TU105803 lncRNA upstream 369303 12500240 ~ 12503502 (-) True G84812
TU105813 lncRNA upstream 532072 12663009 ~ 12663319 (-) True G84822
AMCG00021253 mRNA downstream 238 12122220 ~ 12126845 (-) True AMCG00021253
AMCG00021249 mRNA downstream 26229 12093477 ~ 12100854 (-) True AMCG00021249
AMCG00021251 mRNA downstream 195286 11884997 ~ 11931797 (-) True AMCG00021251
AMCG00021250 mRNA downstream 255572 11847323 ~ 11871511 (-) True AMCG00021250
AMCG00021246 mRNA downstream 283665 11807293 ~ 11843418 (-) True AMCG00021246
AMCG00021257 mRNA upstream 76401 12207338 ~ 12224308 (-) True AMCG00021257
AMCG00021259 mRNA upstream 636684 12767621 ~ 12789334 (-) False AMCG00021259
AMCG00021260 mRNA upstream 779630 12910567 ~ 12916125 (-) True AMCG00021260
AMCG00021258 mRNA upstream 913524 13044461 ~ 13090655 (-) True AMCG00021258
AMCG00021261 mRNA upstream 1055508 13186445 ~ 13192008 (-) True AMCG00021261
TU104623 other downstream 5580506 6544492 ~ 6546577 (-) True G83864
TU104502 other downstream 7375848 4748781 ~ 4751235 (-) False G83761
TU104173 other downstream 9445321 2681560 ~ 2681762 (-) False AMCG00021090
TU104110 other downstream 9667704 2457001 ~ 2459379 (-) True G83428
TU103965 other downstream 10149115 1973160 ~ 1977968 (-) True G83313
TU105805 other upstream 396156 12527093 ~ 12527694 (-) True G84814
TU105842 other upstream 588927 12719864 ~ 12801586 (-) True AMCG00021259
TU105989 other upstream 1496398 13627335 ~ 13627747 (-) True G84952
TU106093 other upstream 1739002 13869939 ~ 13917868 (-) True G85037
TU106219 other upstream 1919037 14049974 ~ 14051897 (-) True G85115

Expression Profile