RNA id: AMCG00021265


Basic Information

Item Value
RNA id AMCG00021265
length 2565
RNA type mRNA
GC content 0.46
exon number 18
gene id AMCG00021265
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13419812 ~ 13433529 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTACACTGACCGAGCGCAAACCTTCTGGCTGACATGTCTCTGAATGCGCAACACCTTTTACATTTTTCGGATAGACATGGTACCTTGTGAGAAGTACATAAGTTATCACATTCATGGTCTAGGATTATTATAACCCCAAAGCATAAACTCTTCATTCAGGTCTCATACCGTGAATTTCCCAGATGTGCTGTCATTGCTGAAAACTCATGAGCTGCAGGTAGAGACACAGCTGTAGGATTGGACCATGTCAGAGCACATTCTGGAAGACGTTTTTCTAAAACGCTcccagcagaaaaaaaaaacctcaccCCTCAACTACAAGGAAAGGCTGTTCATTCTGACAAATGAAAAGATCAGTTACTACGACTATGATTTTGAGAAAGGGaagaagaagagtCTGAAAGGCAGTGTTGACGTTGAGAAAATTAAGTGTGTAGAAACTGTGCTACCGGAGGACAACGCACCCACAGAAAGACTCTTCCCCTTCCAGATCATCTATGATGAAGGACCGCTCTACATTTACGCAAAAAGTGACGACATCCGAAGACAGTGGATACATAAGCTGAAGAATGGATTCAATAAGTCCCGACGTAAAACCAGGAAACCTCTGCCCCCTACCCCTGAGGACATGGAGGAAAAAATCTCCAGGCCTCTCCCACCAGAGCCGCCCAAGACCAATGACTTGGTGACGGTGGTCGCCGAGTACGATTACACACCCATGTCTGAACAGGACCTGCAACTGAGGAAGGATGAAGAATACACCATTCTGGACAAGACAGACGCAAACTGGTGGAAAGCCAGAGACAAATACGGGAATGAAGGCTACATACCTAGCAACTATGTGGTTAAGACTGGAAATGAGCTTGAAAAGTTTAAATGGTACTGCAAAAGCATGAATCGCAGCCAGGCAGAGAACCTCCTGAGAACAGAGAACAAAGACGGAGGGTTTTTGGTTCGAGACTCCAGTAAATCTGGAAAATACACAGTGTCGCTATACACAAAGCCTGGAGGGGATAGCCCTGGGACCTGCAAGCACTACAACATTTGCACCACCTCACAGGGTCAGTTTTATCTGTCCGAAAAATACAACTTCGGTACCATCCCAGATCTCATCCATTACCACCAGCACAACTCTGCAGGGATGGTAAGCAGGCTGAAGCATATTGTTTCTGTCCAATCACCCAATGCTCCTTCTACAGCTGGCCTTGGCTATGGTGTTTGGGAAATCGACCCACGCCACCTCACCTTCCTCAAGGAGCTGGGAAGTGGGCAGTTTGGAGTGGTGAAGTATGGGAAATGGCAGGGTCAGCATGACGTGGCCATCAAGATGATAAAAGAAGGGTCCATGTCAGAGGACGATTTCATTGATGAAGCCAAAGTCATGATGAAGCTCCGCCACCAAAACCTGGTGCAGCTGTACGGGGTTTGCACCAAACAGAGACCCATCTACATTGTGACAGAGTTCCTGTCCAATGGCTGCCTGCTCAACTACCTGCGGGAGACCATTAAGCGGCCAACTGCCATCGAGCTCCTGGAGATGTGCAAAGATGTCAGCGAAGGAATGGCCTACCTGGAGTCACAGATGTACATCCACAGAGACTTGGCTGCCAGAAACTGTTTGGTGGATCATAATGGGACTATCAAGGTGACTGACTTTGGACTATCTAGGTACGTCCTGGATGATGAGTACACCAGCTCGGCCGGATCCAAGTTCCCTGTTCGCTGGTCTCCTCCTGAAGTTCTTCTGTACTGCAAGTTCAGCAGCAAGTCTGACATTTGGGCTTTCGGGGTCCTGATGTGGGAGATCTATACTCTAGGCAAGATGCCCTATGATCGCTTAAACAACACAGAAATCGTGGAAAAAGTGTCGAATGGCCTACGGCTCTATCGCCCCCAGCTGGCTAATGAGAGAGTCTACACCATCATGACAACCTGCTGGACTATGaaaGCAGAAGATCGGCCAAACTTTCAGGACCTTGTGTTGAACATTCAGGATCTACTGTATGAGCTTCAGGAGGGGTGAAGTCAGGGCAAAACCAACACTTTCCTGATGCATTTCCTCTCATAGTCAATTCACAGTCCCAGAAAAGAACTGGCCACTAGCCTCTGTACCTGACATGGAGTCCTGCAGCTCCATTATGATGTCACTTCAGTCCAGTGGACTTTTATAGTTTTGCTAAGGTTTTTCTTACAAATGAAGCCTGTAATTTTACAGAACCCAAACAATGTGAATAAAagtgtgtataaaatatttaagcaTAGCAAGTAAGGGTCTGTTATATGGTCGGAATTagtaagattttgtttttgcttgtgctGCCAAGCCTTTTCCATGTACTATAGTGTGTTTGTGAACAAGAAGCTGCATTTAAACTGTGTGATGTGACTTTTCTGTCATTaggttttctgttttatgcTCCATTTCCTAAGGGGAACATTTCAAATCGGGCCAGTGAAATAAGCAGCTGAATAAGCACTTGTGTTCTTTTGCATTCCCcttcaacacaaaaataaaaagagaattgtaatttgtgtttttctttagcCTGCAATCAATCTCTTCA

Function

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004713 protein tyrosine kinase activity molecular_function

KEGG:

id description
K07370 BTK; Bruton agammaglobulinemia tyrosine kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105833 lncRNA upstream 358049 13056182 ~ 13061763 (+) True G84837
TU105821 lncRNA upstream 580603 12800829 ~ 12839209 (+) True G84825
TU105794 lncRNA upstream 1081605 12337997 ~ 12338207 (+) True G84803
TU105792 lncRNA upstream 1082673 12336802 ~ 12337139 (+) True G84801
TU105738 lncRNA upstream 1318469 12101131 ~ 12101343 (+) True G84759
TU105892 lncRNA downstream 1778 13435307 ~ 13437408 (+) True AMCG00021267
TU105947 lncRNA downstream 138242 13571771 ~ 13572447 (+) True G84923
TU105969 lncRNA downstream 166676 13600205 ~ 13601928 (+) True G84936
TU105971 lncRNA downstream 170329 13603858 ~ 13604159 (+) True G84938
TU106002 lncRNA downstream 247408 13680937 ~ 13685245 (+) True G84962
AMCG00021264 mRNA upstream 12805 13402634 ~ 13407007 (+) True AMCG00021264
AMCG00021262 mRNA upstream 42377 13358258 ~ 13377435 (+) True AMCG00021262
AMCG00021256 mRNA upstream 970054 12442215 ~ 12449758 (+) True AMCG00021256
AMCG00021255 mRNA upstream 1224032 12186009 ~ 12195780 (+) True AMCG00021255
AMCG00021248 mRNA upstream 1276346 12131195 ~ 12143466 (+) True AMCG00021248
AMCG00021267 mRNA downstream 1930 13435459 ~ 13436383 (+) False AMCG00021267
AMCG00021263 mRNA downstream 9256 13442785 ~ 13447518 (+) True AMCG00021263
AMCG00021266 mRNA downstream 15067 13448596 ~ 13454852 (+) True AMCG00021266
AMCG00021277 mRNA downstream 153365 13586894 ~ 13599015 (+) True AMCG00021277
AMCG00021276 mRNA downstream 189320 13622849 ~ 13630470 (+) True AMCG00021276
TU105723 other upstream 1319105 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2432638 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 3996393 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 4786402 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6298575 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2630071 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 3156652 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 3223115 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 3223115 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3564348 16997877 ~ 17004131 (+) True G85869

Expression Profile