RNA id: AMCG00021267


Basic Information

Item Value
RNA id AMCG00021267
length 273
RNA type mRNA
GC content 0.51
exon number 2
gene id AMCG00021267
representative False

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13435307 ~ 13437408 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGGGCAAGGGGTTACTGCAGATCCGCAGCTCCAGCAGTTCATTGAAGTGGAGTCTCAAAAACAGCGATTTCAGCAGCTGGTTCACCAGATGACAGAAGTCTGCTGGGAGAAATGCATGGACAAACCTGGACCTAAGCTGGACTCAAAAACGGAGACATGTTTCGTGAACTGTGTGGAGCGGTTCATTGACACCAGCCAGTTCATTTTGAACAGGCTGGAACAGACTCAGAGGACCAGGGGCTCTTCCTCAGAGAGCATGTCTGACTAA

Function

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0005739 mitochondrion cellular_component
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105833 lncRNA upstream 373696 13056182 ~ 13061763 (+) True G84837
TU105821 lncRNA upstream 596250 12800829 ~ 12839209 (+) True G84825
TU105794 lncRNA upstream 1097252 12337997 ~ 12338207 (+) True G84803
TU105792 lncRNA upstream 1098320 12336802 ~ 12337139 (+) True G84801
TU105738 lncRNA upstream 1334116 12101131 ~ 12101343 (+) True G84759
TU105947 lncRNA downstream 135388 13571771 ~ 13572447 (+) True G84923
TU105969 lncRNA downstream 163822 13600205 ~ 13601928 (+) True G84936
TU105971 lncRNA downstream 167475 13603858 ~ 13604159 (+) True G84938
TU106002 lncRNA downstream 244554 13680937 ~ 13685245 (+) True G84962
TU106054 lncRNA downstream 425287 13861670 ~ 13862498 (+) True G85006
AMCG00021265 mRNA upstream 1930 13419812 ~ 13433529 (+) True AMCG00021265
AMCG00021264 mRNA upstream 28452 13402634 ~ 13407007 (+) True AMCG00021264
AMCG00021262 mRNA upstream 58024 13358258 ~ 13377435 (+) True AMCG00021262
AMCG00021256 mRNA upstream 985701 12442215 ~ 12449758 (+) True AMCG00021256
AMCG00021255 mRNA upstream 1239679 12186009 ~ 12195780 (+) True AMCG00021255
AMCG00021263 mRNA downstream 6402 13442785 ~ 13447518 (+) True AMCG00021263
AMCG00021266 mRNA downstream 12213 13448596 ~ 13454852 (+) True AMCG00021266
AMCG00021277 mRNA downstream 150511 13586894 ~ 13599015 (+) True AMCG00021277
AMCG00021276 mRNA downstream 186466 13622849 ~ 13630470 (+) True AMCG00021276
AMCG00021275 mRNA downstream 213880 13650263 ~ 13662469 (+) True AMCG00021275
TU105723 other upstream 1334752 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2448285 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4012040 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 4802049 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6314222 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2627217 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 3153798 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 3220261 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 3220261 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3561494 16997877 ~ 17004131 (+) True G85869

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00014710 True 1057 mRNA 0.41 2 NC_007125.7 38878482 ~ 38881818 (+)