RNA id: TU105892


Basic Information

Item Value
RNA id TU105892
length 1450
lncRNA type sense_over
GC content 0.41
exon number 2
gene id AMCG00021267
representative True

Chromosome Information

Item Value
chromosome id CM030130.1
NCBI id CM030130.1
chromosome length 39556810
location 13435307 ~ 13437408 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTTCCGGCGAATCGCGCTGCCTGTGCAGACACGTGAAGGTCAGCGGCTTTGATCTTATTTCCCTTAAAGTGTCGGCTGTAAGTGCTCgggtttatttaaaactgtattcgAGAAACCACGCAGGATCTGAAGTTAAAAAAGTCATCTGTCAATGGAGGGGCAAGGGGTTACTGCAGATCCGCAGCTCCAGCAGTTCATTGAAGTGGAGTCTCAAAAACAGCGATTTCAGCAGCTGGTTCACCAGATGACAGAAGTCTGCTGGGAGAAATGCATGGACAAACCTGGACCTAAGCTGGACTCAAAAACGGAGACATGTTTCGTGAACTGTGTGGAGCGGTTCATTGACACCAGCCAGTTCATTTTGAACAGGCTGGAACAGACTCAGAGGACCAGGGGCTCTTCCTCAGAGAGCATGTCTGACTAAACCGTGTTGGCAATAGGACACAGACTTTGGCGACATCGAACGATGATAGATGCAATCCAGCGAGGCTGCTGCATGTGCAGCCTGGGAAGAATAGAGCCACGTTAATAAGGGTGGACTACAGATGTTTGGTGCCTCATTTCACCTGGAGCAGTGATGCAGTCTCTCACTCTCGTTCCCCCTTACAGCAGGTTCTACAGAACGTATTAGAACATGATTTCAGTTGTCAAAGCCACTGAGTTGCCTTTACCTtgtcaaatatttaacattgtaCAGGACAAATCCATTTATACAAATAAGATTCAGCCCCTTTTAAAACATGTAGTGGATTTGTGGTTCATCTGCACTGGGTGGAAAACCAAGAATGCTGaagctgaagaaaaaacatacaagaacACTGAACTGCAACTCCCATTCACATCCAAAACCCTCTGAAGCTTCAATGGCTCACTGCACAAGAAAAGCCAACTGGAAGCAGCCAAAGTACACTAACGTTTTTGCAACTGTACACTTGTCCTGTTAATGTCAAATACAGAAAACTGAACTCGCAGTGTGCTTTTTTGTgggttaaaacattttacaatttgtagatgaaagtgaaatacaaaatgatggTTATGCATTTTGCCGATCCAAGATTAGTACAGTAAGAGGGTTTTCTAAGGCAATACAAACTGCCTCTGCGACAGCAGTTTCTTTTATCTACTGGTTTAGTTCTAAAAAatgctaaacaaaaacattgtttccaCATAAAACCTAGTAAAACCAACCTTTAATAGTAGCCTTATCTTGCAGAGAAAAGCTCCACAAGGTTTAATAAGTAATTTAGACAAATAAGTTGCATAAGGATGAaccatacattttcaacagtTAAAAAATACACCCAAGACTAGAAACCAAATTGCATATTCCATTTCAGATTAATAAATGTTGGTTTCTTTGCATACCACAAATATTTCCAAACTTTTGTCTTGCTGTACTTAACCAATTTCCTTCATTACAATAGCAggacatttatataaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU105833 lncRNA upstream 373544 13056182 ~ 13061763 (+) True G84837
TU105821 lncRNA upstream 596098 12800829 ~ 12839209 (+) True G84825
TU105794 lncRNA upstream 1097100 12337997 ~ 12338207 (+) True G84803
TU105792 lncRNA upstream 1098168 12336802 ~ 12337139 (+) True G84801
TU105738 lncRNA upstream 1333964 12101131 ~ 12101343 (+) True G84759
TU105947 lncRNA downstream 134363 13571771 ~ 13572447 (+) True G84923
TU105969 lncRNA downstream 162797 13600205 ~ 13601928 (+) True G84936
TU105971 lncRNA downstream 166450 13603858 ~ 13604159 (+) True G84938
TU106002 lncRNA downstream 243529 13680937 ~ 13685245 (+) True G84962
TU106054 lncRNA downstream 424262 13861670 ~ 13862498 (+) True G85006
AMCG00021265 mRNA upstream 1778 13419812 ~ 13433529 (+) True AMCG00021265
AMCG00021264 mRNA upstream 28300 13402634 ~ 13407007 (+) True AMCG00021264
AMCG00021262 mRNA upstream 57872 13358258 ~ 13377435 (+) True AMCG00021262
AMCG00021256 mRNA upstream 985549 12442215 ~ 12449758 (+) True AMCG00021256
AMCG00021255 mRNA upstream 1239527 12186009 ~ 12195780 (+) True AMCG00021255
AMCG00021263 mRNA downstream 5377 13442785 ~ 13447518 (+) True AMCG00021263
AMCG00021266 mRNA downstream 11188 13448596 ~ 13454852 (+) True AMCG00021266
AMCG00021277 mRNA downstream 149486 13586894 ~ 13599015 (+) True AMCG00021277
AMCG00021276 mRNA downstream 185441 13622849 ~ 13630470 (+) True AMCG00021276
AMCG00021275 mRNA downstream 212855 13650263 ~ 13662469 (+) True AMCG00021275
TU105723 other upstream 1334600 12075345 ~ 12100707 (+) True G84749
TU105614 other upstream 2448133 10963148 ~ 10987174 (+) True G84657
TU105325 other upstream 4011888 9416267 ~ 9423419 (+) True G84425
TU105166 other upstream 4801897 8631727 ~ 8633410 (+) True G84301
TU104814 other upstream 6314070 7115381 ~ 7121237 (+) False AMCG00021150
TU106850 other downstream 2626192 16063600 ~ 16073618 (+) False AMCG00021373
TU107049 other downstream 3152773 16590181 ~ 16592973 (+) True G85764
TU107079 other downstream 3219236 16656644 ~ 16661882 (+) True G85787
TU107080 other downstream 3219236 16656644 ~ 16714038 (+) False G85787
TU107177 other downstream 3560469 16997877 ~ 17004131 (+) True G85869

Expression Profile